Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c07
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1448 - 27168389-27172021                                         31   0.57 
01_01_0430 + 3258438-3259200,3259929-3261454                           29   2.3  
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593...    29   4.0  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           28   5.3  
11_06_0095 - 20030237-20031711,20031731-20033057                       28   7.0  
04_01_0034 - 401208-402923                                             28   7.0  
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    27   9.3  
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    27   9.3  

>08_02_1448 - 27168389-27172021
          Length = 1210

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 517  LDSLYFLKVLEIEANHQLRHIEAGVFKNLTSLQQLSI 627
            +D L  LK+LEI+A  ++     G+ + L +L++LSI
Sbjct: 1130 MDGLVSLKILEIQACAEIEEFPQGLLQRLPTLKELSI 1166


>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 111 VRYKKMDLSFTKILY*SLKKDFTFNN*TKNRLKLGYAPSTLSLAAALQRLHQS 269
           V YK +DL+FTKIL     K F   + + NR   G  P T++  + L  L+ S
Sbjct: 589 VTYKGLDLTFTKIL-----KTFVLIDVSNNRFH-GSIPETIATLSVLSGLNMS 635


>03_02_0149 +
           5933134-5933207,5935039-5935267,5935370-5935468,
           5935582-5935616,5935694-5935769,5936552-5936662,
           5937001-5937087,5937302-5937395,5937489-5937606,
           5938047-5938542,5939263-5939298,5940047-5940578,
           5940668-5940792
          Length = 703

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +3

Query: 204 LKLGYAPSTL-SLAAALQRLHQSRRPDRSLQR-IVPHDPVPA 323
           L +  APS L + AAA+Q+L Q++ PD  + R IV +D  P+
Sbjct: 80  LPVHLAPSVLQTAAAAVQKLSQAKMPDELIAREIVINDADPS 121


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 231 LSLAAALQRLHQSRRPDRSLQRIVPHDPVP 320
           L+ A   +  H    PD  L+R+ PHD VP
Sbjct: 121 LAFAVMARAAHPPASPDHPLRRLNPHDCVP 150


>11_06_0095 - 20030237-20031711,20031731-20033057
          Length = 933

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +1

Query: 295 ELSHTILYPQEKSDDLPVELGQDGYSGCICRASKQNGVVVCFGNYECRMFPKIKVKCEFL 474
           EL +   +P+EK  + P E+ Q  Y      ASK  GV +   +    +F + K + EF 
Sbjct: 352 ELFYKAAFPREKKLECPTEVTQLAYQ----IASKCKGVPLAIVSVGRLLFVRDKTEEEFR 407

Query: 475 RVRT----TVITNIRKGHLDSLYFLKVL 546
           R+       +I N    H+ ++ +L  +
Sbjct: 408 RIHNQLDWELINNPSMEHVRNILYLSYI 435


>04_01_0034 - 401208-402923
          Length = 571

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 270 RRPDRSLQRIVPHDPVPAREE*RPARGIRPGW 365
           R+P R L R +P  P  +    RPA  + P W
Sbjct: 139 RQPLRDLSRSLPDTPRASTSSLRPAAAVAPTW 170


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 523 SLYFLKVLEIEANHQLRHIEAGVFKNLTSLQQLSIS 630
           +L FL+VL++  N          F N+T L+QLS+S
Sbjct: 213 NLTFLRVLDLSNNLLTARFPTISFANMTLLEQLSLS 248


>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 565 QLRHIEAGVFKNLTSLQQLSIS 630
           +LR +  G F+NLT+LQ+L++S
Sbjct: 128 KLRFLYFGAFENLTNLQELNLS 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,242
Number of Sequences: 37544
Number of extensions: 308342
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)