Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c07
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   7.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 535 LKVLEIEANHQLRHIEAGVFKNLTSLQQLSI 627
           L VL +  N  L HI+A +FK+L  LQ L +
Sbjct: 337 LIVLNLSYN-MLTHIDARMFKDLFFLQILDL 366


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 120 KKMDLSFTKILY*SLKKDFTFNN*TKNRLKLGYAPSTLSLAAALQRLHQSRR 275
           K+   S+T+     L+K+F FN     R ++  A +       ++   Q+RR
Sbjct: 9   KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 60


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 471 SQSQNNSHNEYKKR 512
           S +QNN+ N+YK +
Sbjct: 420 SNNQNNNQNKYKNQ 433


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 49  WIISNKSMC*ANLEITLGEI 108
           WI+SNK    AN ++   E+
Sbjct: 374 WIVSNKYQKIANGDLNFNEV 393


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 522 IQVSFSYIRYDCCSDSEKFAFHFDLRKHSTF 430
           I +SF++I    CS  +   FH +   + T+
Sbjct: 155 IMLSFAWIGSVVCSLPQTIVFHLETHPNVTW 185


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 459 EMRISQSQNNSHNEYK 506
           +M I+ + NN+ N+YK
Sbjct: 131 QMSINNTNNNNTNKYK 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,802
Number of Sequences: 438
Number of extensions: 3279
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)