Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c06
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   180   1e-46
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  180 bits (438), Expect = 1e-46
 Identities = 93/197 (47%), Positives = 115/197 (58%)
 Frame = +1

Query: 1   LILLISRRIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 180
           L+LL+   + E G G G TVYPPLSS  +H G ++DLAI SL L GISS           
Sbjct: 116 LMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATM 175

Query: 181 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 360
                   S  Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP
Sbjct: 176 INMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDP 235

Query: 361 ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV* 540
           +LYQHLF FFGHPEVYILI+P FG++SHII      K  F                 +V 
Sbjct: 236 VLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVW 294

Query: 541 AHHIFTVGIDIDTRAYF 591
           +HH+FTVG+D+DTRAYF
Sbjct: 295 SHHLFTVGLDVDTRAYF 311


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 444 YYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRY 572
           YY T   KK +   F  +LCYT       Y      ++C Y Y
Sbjct: 190 YYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHY 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,792
Number of Sequences: 5004
Number of extensions: 33327
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)