Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23c05
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 53 2e-07
01_06_0663 - 30991390-30992340 50 1e-06
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 47 7e-06
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 34 7e-04
05_07_0134 - 27911920-27912762 40 0.001
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 40 0.001
04_01_0035 - 433848-434372,434905-435381 31 0.69
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 1.6
07_03_1086 + 23858419-23859423,23859527-23859610 29 2.1
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 29 2.8
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 29 2.8
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409... 28 3.7
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 3.7
04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781 28 3.7
11_06_0743 + 26847652-26849424 28 4.9
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 27 8.6
04_04_1575 + 34548774-34549109,34549979-34550185 27 8.6
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 27 8.6
01_05_0631 + 23835120-23836109,23836204-23836674 27 8.6
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 52.8 bits (121), Expect = 2e-07
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Frame = +1
Query: 82 STQCLYTAARRA----YSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNA 249
++Q +Y A++ A + T K + F+GLG MG MA++L+K GF+V YD K L
Sbjct: 302 ASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLAR 361
Query: 250 AAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLD-VYLGKDGVVAHAKKGSLLIDSSTID 426
G +S I+ +N+V + V G G V+ G+ +I SST+
Sbjct: 362 FTDLGGLTKDS-PEEVSKDVEILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVS 420
Query: 427 PNVPKQIFP--IALXKGLGFTDAPVSG 501
P ++ A + + DAPVSG
Sbjct: 421 PGFVIKLKERLEAECRDIKLVDAPVSG 447
>01_06_0663 - 30991390-30992340
Length = 316
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Frame = +1
Query: 112 RAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXX 291
R S +T + VA++G G MG MA +L+ G+ + Y+ + G T A S
Sbjct: 13 RPISPDTTR-VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRA 71
Query: 292 XXXXXXXXXSILTSNKVVLDVYLGKD-GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALXK 468
++ V L G +A G LL+D +T DP + +I A K
Sbjct: 72 AAAAADVIFLMVGFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAK 131
Query: 469 GLGFTDAPVSG 501
DAPVSG
Sbjct: 132 SCAAVDAPVSG 142
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 47.2 bits (107), Expect = 7e-06
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +1
Query: 178 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 357
MA NLV G+ V +D +++ + + +G+ S ++L S+ VLDVY
Sbjct: 1 MARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVITMLPSSAHVLDVY 60
Query: 358 LGKDGVVAHAK-KGS-LLIDSSTIDPNVPKQI 447
G++G++A+ G L IDSST+DP ++I
Sbjct: 61 NGRNGLLANGGCLGPWLYIDSSTVDPQTSRKI 92
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.9 bits (74), Expect(2) = 7e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 142 VAFLGLGNMGGFMAANLVKKGFTV 213
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
Score = 25.8 bits (54), Expect(2) = 7e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 334 NKVVLDVYLGKDGVVAHAKKGSLLIDSSTID 426
N+ + V KDGV+ +G +D ST+D
Sbjct: 30 NRTLSKVVFDKDGVLEQIGEGKGYVDMSTVD 60
>05_07_0134 - 27911920-27912762
Length = 280
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 178 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 357
MAA L+ GF V Y + A G + A S +++ + V V
Sbjct: 1 MAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVFTMVGNPGDVRAVV 60
Query: 358 L-GKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALXKGLGFTDAPVSG 501
L GV+A + G +L+D ++ P++ +++ A G D+PVSG
Sbjct: 61 LDAASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSG 109
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 39.9 bits (89), Expect = 0.001
Identities = 33/140 (23%), Positives = 54/140 (38%)
Frame = +1
Query: 67 ARTILSTQCLYTAARRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALN 246
AR + S C +++ + V FLGLG MG MA+NL+ G V ++ ++ +
Sbjct: 30 ARLVFS--CSASSSSPSGEGGFSGKVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCD 87
Query: 247 AAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTID 426
G S ++L + ++V G +G G +D ST+D
Sbjct: 88 PLLSLGAKYEPSPADVASSCDVTFAMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVD 147
Query: 427 PNVPKQIFPIALXKGLGFTD 486
K I G F +
Sbjct: 148 AATSKLIGKHITSTGASFLE 167
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 30.7 bits (66), Expect = 0.69
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Frame = +1
Query: 103 AARRAY---SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTP 273
AAR Y S + K+V +GLG++G +A L G T+ Y+ S+ ++ + N
Sbjct: 149 AARGDYPLGSKLSGKHVGIIGLGSIGSLIAKRLQAFGCTI-SYN-SRRPKDSVSYNYFPD 206
Query: 274 ANSIXXXXXXXXXXXSILTSNKVVLDVY----LGKDGVVAHAKKGSLLIDSSTI 423
+ ++ + ++D LGKDGVV + +G ++ ++ I
Sbjct: 207 VTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGVVVNIARGGIVDEAELI 260
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 178 MAANLVKKGFTVRGYDPSKDALN 246
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 366 RWRCGSCEKRIASDRFEYNRSECSQTDLPYSPXERAGIHR 485
R R SC SEC DL ++P AGIHR
Sbjct: 10 RRRSTSCYSDSGDSSCSEPFSECGSDDLSFTPAAAAGIHR 49
>10_08_0426 - 17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 213 NCETLFNQVRSHEPSHVSEAEESHILVG 130
N + + N V SH PSH SE E+ +L G
Sbjct: 1072 NSDKISNDVGSHSPSH-SERNEARVLTG 1098
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 391 FSHEPQRHLCPGTRRARLYCWSIWKRPRRLHQRLQQWSWL 272
F E + G A L WS W R R +H R Q W WL
Sbjct: 68 FMQEEGGKVFTGRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>12_01_0518 -
4093206-4094955,4095357-4095810,4095966-4096236,
4096308-4096628
Length = 931
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +1
Query: 4 VALRPRTRPHAKLRKNKFKMAARTILSTQCLYTAARRAYSSNTDKN 141
VAL T P A ++ +MAAR I +T+ L A RAY D N
Sbjct: 55 VALHVATPPAAADQEGAMRMAARRIRATESL-AALLRAYHDFCDLN 99
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 142 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 270
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
>04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781
Length = 551
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 125 LTPTRMWLSSASETWEGSWLRTW 193
L P RMWL+S W+G TW
Sbjct: 523 LRPQRMWLASTVSGWDGLPRPTW 545
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 343 RLYCWSIWKRPRRLHQRLQQWSWLAS-LRSWPLRS 242
R + W+ KR RL +RL+Q W+A+ +R + RS
Sbjct: 94 RRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRS 128
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 367 LCPGTRRARLYCWSIWKRPRRLHQRLQQWSWLASLRSWPLRSVHL-WK 227
L T L C ++ + PRRL R + WS + ++P+ ++ + W+
Sbjct: 148 LSTATCEVSLPCATMVRMPRRLRWRSEPWSHMWPRMTFPIATLEIRWR 195
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 348 RRVPGQRWRCGSCEKRIASDRFEYNRSECSQTDLP 452
RR+ R RCG+ + I FE +E Q+DLP
Sbjct: 56 RRIASARVRCGAAVRFIGQSEFE---AEVLQSDLP 87
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 503 PPDTGASVNPSPFXRAIGKICLG-TFGSIVLESIRSDPFFA*ATTPSLPRYTSSTTLLLV 327
PP T S P+P R I + L ++ S RS A PSLP + + L L+
Sbjct: 7 PPPTPTSAAPAPCPRQIAAVVLNHPSSALTPASTRSLSASLLAVAPSLPTPVADSVLKLL 66
>01_05_0631 + 23835120-23836109,23836204-23836674
Length = 486
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 429 RIYCTRIDQKRSF-FRMSHNAIFAQVHVEHDFIAGQYGNDHVDSINGCSNGVG 274
R+ +R+D+ +S F M A VH +F D+ S NG NG G
Sbjct: 92 RLRVSRVDETKSMMFSMEEGEEMADVHEGSEFRWRLVCRDNSSSSNGNGNGRG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,963,946
Number of Sequences: 37544
Number of extensions: 366615
Number of successful extensions: 1088
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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