Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c03
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.25 
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.8  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   3.1  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   7.2  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   7.2  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 366 RGREASVGRDAAYDVHRSSRITVG*ANSGPPQDRIV 259
           RGRE S  R++  D+ RSS ++ G + S  P+ R++
Sbjct: 684 RGRERSSNRNSYSDLSRSSSLSRGRSRSYTPEGRLI 719


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
 Frame = -1

Query: 507 GSPSNRFNGLVVTESVSAAYKACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAY 328
           GS S   NGL+   S +A     SF  T   + ++   EN    G  +    S  +  A 
Sbjct: 25  GSKSASTNGLLSAASSAAG---SSFGLTPSAI-LQQKHENAQQ-GKKQNNSKSFSKKPAI 79

Query: 327 DVHRSSRITVG*ANSGPPQDRIVGIV--SSIKTRSCRQNCISR*NTAPASMSEHTAS 163
           DVH         + +GP + RIV  V  ++  T     + +SR +  P S S   +S
Sbjct: 80  DVHSEDAFPTLLSKTGPSKPRIVSWVRKTASNTSVAGSDSVSR-DKIPFSASSRASS 135


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 274 WRARVGSAYSNSGGTMYIISRITPHTSFSPTTRANDIAVLRTRF 405
           W +R G A +   G  Y++S I  + S +    AND+     R+
Sbjct: 341 WTSRGGRAAAFFMGLTYLVSMIAQNISDNTVAAANDLLYFFPRY 384


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = +1

Query: 163 GSGVFTHRCGGSILTRNAILSAASCFYTGNNAHDAVLWRARVGSAYSNSGGTMYIISRIT 342
           G+G  +     + L +   L+ A  F+  N+ HD   W   + S+Y +   T      + 
Sbjct: 430 GNGNNSESSDNAQLKKEEHLNLAIHFHLLND-HDKCFWHTGMASSYEDYTATFIYGLYLR 488

Query: 343 PHTSFSPTTRANDIAVLRT 399
              + SP T  + + +L+T
Sbjct: 489 HGLACSPKTHVSFLFLLKT 507


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 323 TS*AASRPTLASLPRPGPTTLPFSGPDSTFSSW 421
           T  A +RP   +  RPG T +P   P S  S++
Sbjct: 37  TKPATTRPMAEARARPGATAVPRRSPTSPQSAY 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,637
Number of Sequences: 5004
Number of extensions: 47708
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)