Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23c03
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0085 - 689489-689935 31 0.77
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 30 1.3
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549... 29 2.3
08_02_0828 - 21596570-21597337 29 3.1
06_03_1219 - 28491185-28494415 29 3.1
03_01_0564 - 4176177-4178096 28 5.4
08_02_1618 + 28280414-28281193 27 7.2
09_06_0181 + 21395695-21396735 27 9.5
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062... 27 9.5
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 27 9.5
02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024... 27 9.5
01_06_1587 + 38468956-38469090,38470599-38470742,38470819-384708... 27 9.5
01_01_0735 + 5730783-5733320 27 9.5
>12_01_0085 - 689489-689935
Length = 148
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 99 RRRDASSDYILSICYGFIEQSRKRCVHS*MRGQYSNE 209
RRRD SS+ SIC G +E+ + C + R ++ E
Sbjct: 64 RRRDESSEMECSICLGELEEGERCCTLAACRHEFHKE 100
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 262 DAVLWRARVGSAYSNSGGTMYIISRITPHTSFS 360
D ++ + GS YS++G +Y + R+ P+T+ S
Sbjct: 2242 DPIIPKFHYGSHYSSAGTVLYYLFRVEPYTTLS 2274
>01_07_0327 +
42752697-42752711,42753937-42754127,42754822-42754919,
42755792-42755880
Length = 130
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = -1
Query: 501 PSN--RFNGLVVTESVSAAYKACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAY 328
P+N R G V + A Y CS T E + P + GPG + + R Y
Sbjct: 56 PTNVMRMEGQYVASWLIACYCTCSHHSTCPEETLTQDPPLAEIAGPGETTKFGMNRRMGY 115
>08_02_0828 - 21596570-21597337
Length = 255
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 338 SRPTLASLPRPGPTTLPFSGPDSTFSS 418
S+P ++ +P P LPF+GP + FS+
Sbjct: 212 SKPHTETVVKPPPALLPFAGPAAYFSA 238
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 241 YTGNNAHDAVLWRARVGSAYSNSGGTMYIISRITPH 348
+ G A + WRAR+ A S G ++I R PH
Sbjct: 878 HAGGGAPQQLDWRARLNIARGASRGVLHIHERCKPH 913
>03_01_0564 - 4176177-4178096
Length = 639
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 401 LVLRTAMSLARVVGEKLVWG-VMRLMMYIVPPELL*AEPTLARH 273
L+ A+S+ +VG+ VWG +M + +Y+V ++ A L +H
Sbjct: 244 LMTLVALSIILIVGKVTVWGAIMFVSIYVVYAFVVAANEVLRKH 287
>08_02_1618 + 28280414-28281193
Length = 259
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 314 ERCTS*AASRPTLASLPRPGPTTLPFSGPDSTFS 415
E C + PT+ PR P + P S PD+ +
Sbjct: 59 EGCADGSGGGPTVRRRPRSSPASTPCSNPDAVLA 92
>09_06_0181 + 21395695-21396735
Length = 346
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 25 MNSIITLFFLYVSAVSATDDPSQRIGGG 108
+NS++ L F +A+ DDPS +GGG
Sbjct: 126 VNSVVVLTFS--AALLGVDDPSSSVGGG 151
>06_03_0726 +
23904350-23904964,23905986-23906021,23906158-23906256,
23906445-23906627,23907016-23907105,23907187-23907285,
23907584-23907688,23907786-23907926,23908009-23908296,
23908536-23908826
Length = 648
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 390 NGNVVGPGRGREASVGRDAAYDVHR 316
NG GR R ASV R A+ D HR
Sbjct: 176 NGGAAAAGRQRYASVDRRASMDRHR 200
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 266 RSCGGPELAQPTVILEE--RCTS*AASRPTLASLPRPG 373
+SC +++PT +E RC S +A RP LP PG
Sbjct: 54 KSCRSTTVSRPTSPSKEVSRCQSFSADRPHAHPLPIPG 91
>02_05_1196 -
34901320-34901342,34901937-34902041,34902314-34902482,
34902645-34902716,34902788-34902871,34903219-34903317,
34903416-34903515,34903704-34903878,34903985-34904198,
34904727-34904803,34904879-34905048,34905593-34905629,
34905988-34906123,34906658-34906915
Length = 572
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 19 ARMNSIITLFFLYVSAVSATDDPSQRIGGGTL 114
+R N I+T F L S S T P+ G GT+
Sbjct: 420 SRQNKIVTQFILSRSGNSVTGKPNNSSGDGTV 451
>01_06_1587 +
38468956-38469090,38470599-38470742,38470819-38470845,
38470970-38471060,38471224-38471267,38471352-38471450,
38472233-38472331,38472545-38472646,38472758-38472823,
38472960-38473084,38473175-38473346,38473588-38473674
Length = 396
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 530 DTGSVEDTAPHPIASTAWSLLKV*VR 453
D+ S++ PH +ASTA +LK+ V+
Sbjct: 158 DSASIKKRGPHTVASTALDVLKLIVQ 183
>01_01_0735 + 5730783-5733320
Length = 845
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 224 RQLLVFILETMPTMRSCGGPELAQPTVILEERCTS*AASRPTLASLPRPGPTTLPFS 394
R LL+F+ +++CGG + P + +S + L S+P G L F+
Sbjct: 6 RLLLLFLTAAHAALQTCGGDQTPGPVANVSRVWSSNTSRDVLLCSVPGNGNEKLSFA 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,571,935
Number of Sequences: 37544
Number of extensions: 383435
Number of successful extensions: 1043
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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