Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c03
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    40   9e-04
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    38   0.006
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   0.40 
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        29   2.8  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    29   2.8  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z46794-7|CAA86777.1|  120|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81491-12|CAI46569.1|  177|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   6.5  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   6.5  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   6.5  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   6.5  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = +1

Query: 97  IGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCFYTGNNAHDAVLW 276
           IGG    P  S+P+   LL+  G     HRCGGS++  N +L+AA CF           +
Sbjct: 59  IGGSESSP-HSWPWTVQLLSRLGH----HRCGGSLIDPNFVLTAAHCFAKDRR---PTSY 110

Query: 277 RARVGSAYSNSGGTMYIISRITPHTSFS-PTTRANDIAVLR 396
             RVG   S S G+ + ++ ++ H  ++     + D A++R
Sbjct: 111 SVRVGGHRSGS-GSPHRVTAVSIHPWYNIGFPSSYDFAIMR 150


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 1/157 (0%)
 Frame = +1

Query: 43  LFFLYVSAVSATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAIL 222
           L ++ V+A  A      R+ GG      ++P+  AL N        H CG SIL +  ++
Sbjct: 9   LRYVEVNARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKA---HHCGASILDKTHLI 65

Query: 223 SAASCFYTGNNAHDAVLWRARVGSAYSNSGGTMYIISRITPHTSFSPTTRANDIAVLRTR 402
           +AA CF          +      +  ++    ++ + RI  +  +     ++DIA+L   
Sbjct: 66  TAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKDIF-SHDIAILEIP 124

Query: 403 F-NIQFVAGLVEAAGLVGRTYTFSNDQAVEAIGWGAV 510
           +  I+F     +   L  + + ++  +     GWG++
Sbjct: 125 YPGIEF-NEYAQPICLPSKDFVYTPGRQCVVSGWGSM 160


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 103 GGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCF 240
           G T  P    P+A  +      G F   CGG+++T   +L+AA CF
Sbjct: 34  GNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCF 79


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/72 (27%), Positives = 27/72 (37%)
 Frame = -3

Query: 409 C*IWS*ERQCRWPGSWERS*CGA*CGL*CTSFLQNYCRLSQLWPATRPHRGHCFQYKNKK 230
           C IW+   QCR    +    C   CG+   +++   C       A    RG C   KNK 
Sbjct: 718 CPIWAQRGQCRSNPGYMTCQCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECL--KNKW 775

Query: 229 LPTKLHFSLEYC 194
           +P     S   C
Sbjct: 776 MPENCRRSCNTC 787


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 46  FFLYVSAVSATDDPS-QRIGGGTLVP-ITSYPFATALLNNPGSGVF 177
           FF Y+ + S    PS Q+ GG T++P  TS P +T   +  GS V+
Sbjct: 412 FFFYMHSFSKWKHPSSQQAGGSTILPTTTSIPMSTT-SSGTGSPVY 456


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 46  FFLYVSAVSATDDPS-QRIGGGTLVP-ITSYPFATALLNNPGSGVF 177
           FF Y+ + S    PS Q+ GG T++P  TS P +T   +  GS V+
Sbjct: 412 FFFYMHSFSKWKHPSSQQAGGSTILPTTTSIPMSTT-SSGTGSPVY 456


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 245 LETMPTMRSCGGPELAQPTVILEERCTS*AASRPTLASLPRPGPTTLPFSGPDST 409
           L T+PT      P L  P   ++        + PTL +LP   P T P   P +T
Sbjct: 207 LWTLPTQPPAWSPMLDSPIKPIQNSMFPTFPTMPTLPTLPTLAPFTFPTLPPPTT 261


>Z46794-7|CAA86777.1|  120|Caenorhabditis elegans Hypothetical
           protein R06F6.7 protein.
          Length = 120

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 447 KACSFDETSHELNVESGPENGNVVGPGRGREASVGRDAAYDVHR 316
           +A + D T  E+   + P++G ++GPG  R    G  + YD+ +
Sbjct: 64  EAPNTDSTPVEILAAAKPDSGILLGPGDNRVKRDGLPSFYDIRK 107


>Z81491-12|CAI46569.1|  177|Caenorhabditis elegans Hypothetical
           protein D1086.10a protein.
          Length = 177

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +2

Query: 248 ETMPTMRSCGGPELAQPTVILEERCTS*AASRPTLASLPRPGPTTLPF----SGPDSTFS 415
           E+ P+ +S   P  A  T    E+  + + S PT  +   PG T LPF    + P S  S
Sbjct: 42  ESSPS-QSTDSPSTASSTAT--EQIFTPSTSEPTSTTTTAPGTTELPFEWNVTAPPSVVS 98

Query: 416 SW 421
            W
Sbjct: 99  KW 100


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 70   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 70   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 70   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 70   SATDDPSQRIGGGTLVPITSYPFATALLNNPGSGVFT 180
            S   +P++R+    L+P T Y      +N  G G F+
Sbjct: 2672 STGHNPTERLNLDQLIPYTQYQIRVRAINKEGDGPFS 2708


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 530  DTGSVEDTAPHPIASTAWSLLKV*VRPTRPAASTRPA 420
            D G VE+TAP P        +KV VRP       RP+
Sbjct: 1973 DGGMVENTAPQPTTYQRPHPIKVQVRPATKPYRPRPS 2009


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +1

Query: 178 THRCGGSILTRNAILSAASCFYTGNNAHDAVLWRARVGSAYSN 306
           T+ CGG ++  + ++++A C ++G++   AV  +  +G  + N
Sbjct: 43  TNVCGGVLIAPSIVITSAHCVFSGDDF--AVTAKVTLGDVHLN 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,475,317
Number of Sequences: 27780
Number of extensions: 299349
Number of successful extensions: 825
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)