Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c03
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    45   4e-07
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 45.2 bits (102), Expect = 4e-07
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
 Frame = +1

Query: 82  DPSQRIGGGTLVPITSYPFATALLNNPGSGVFTHRCGGSILTRNAILSAASCFYTGNNAH 261
           +PS RI GGT   I  +P    +      G+    CG +I+++  +L+AA C    N   
Sbjct: 157 NPS-RIVGGTNTGINEFPMMAGIKRTYEPGMI---CGATIISKRYVLTAAHCIIDENTTK 212

Query: 262 DAVLWRARVGSAYSNSGGT-MYIISRITPHTSF----SPTTRANDIAVLRTRFNIQFVAG 426
            A++      S+ + +  T ++ I+++  H  +        + NDIA+L+T  +I+F   
Sbjct: 213 LAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF-GD 271

Query: 427 LVEAAGLVGRTYTFS-NDQAVEAIGWGAVSSTDPVSSI 537
            V  A L  + +  S     V  +GWG  S    +S I
Sbjct: 272 KVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHI 309


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 415 TEC*IWS*ERQC 380
           T+C +W+ +RQC
Sbjct: 184 TDCQLWAIDRQC 195



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 260 TMRSCGGPELAQPTVILEE 316
           T   CG PE   P VIL +
Sbjct: 522 TWTFCGTPEYVAPEVILNK 540


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 280 ARVGSAYSNSGGTMYI 327
           +RVG+ Y  SGG M +
Sbjct: 199 SRVGTKYHRSGGLMNV 214


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 245 LETMPTMRSCGGP 283
           + TMPTM S  GP
Sbjct: 439 MPTMPTMPSMAGP 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,103
Number of Sequences: 438
Number of extensions: 3420
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)