Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b20
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    66   4e-12
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    28   0.98 
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   6.9  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   6.9  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   9.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   9.1  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
 Frame = +2

Query: 98  GRFPGIVIIIILAEFCERFSYSGMRAFLTLYLR--------SKLGYTDDGATETYHVFST 253
           G  P    III+ E CERF+Y G+      Y++          L   + GA    + F+ 
Sbjct: 79  GTIPWKAFIIIIVELCERFAYYGLTVPFQNYMQFGPKDATPGALNLGESGADGLSNFFTF 138

Query: 254 LXYVFPIIGGILADNYLGKFXTILYMMFVYAAGNILVAITAIPHFALPGRLC--TLIGLF 427
             YV P+   ++AD +LG++ TI+    +Y  G +++  TAIP     G+     ++ L 
Sbjct: 139 WCYVTPVGAALIADQFLGRYNTIVCSAVIYFIGILILTCTAIPSVIDAGKSMGGFVVSLI 198

Query: 428 MITVXTGGIK 457
           +I + TGGIK
Sbjct: 199 IIGLGTGGIK 208


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 104 FPGIVIIIILAEFCER--FSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPII 277
           FPGI+ +I+   F  +   S +G+  +   ++ +   ++       +++FS   Y FPII
Sbjct: 103 FPGIMHLIVYHFFLRKDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPII 162


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 417 IRVHNLPGRAKCGIAVIATKMLPA 346
           IRV N P   KCG+ +I +   P+
Sbjct: 407 IRVQNAPSLIKCGVCLIISSTTPS 430


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 173 AFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIGGI 286
           A  T+Y+ +K    ++   E   +   L  +FPI GG+
Sbjct: 10  ALFTVYIGAKWSAQEEEPEEKQLINKRLAVLFPIFGGV 47


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 364 CNNCNTAFRSTWKIMHSDRSVHDNSXHGRHKAPA*PLLEEISSKYLN 504
           C    TA   TWK   S+   H+N     +K    P   E S K LN
Sbjct: 87  CPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHE-SVKILN 132


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +2

Query: 137 EFCERFSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLXYVFPIIGGILADNYLGKFX 316
           +FC+     G+  FL   L+ +LGY+   A         L  +   +  +L+D    +  
Sbjct: 280 QFCQDLVLYGISTFLPSILKLELGYSSLAAQYMSVPVYALGGISVYVICLLSDRTNIRGW 339

Query: 317 TILYMMFVYAAGNILVAIT 373
            I+ M F   AG I++  T
Sbjct: 340 FIIGMNFFGLAGFIILLAT 358


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 281 GILADNYLGKFXTILYMMFVYAAGNILVAITAIP 382
           G L++NY+  +   +Y +F+Y+    L A   +P
Sbjct: 686 GKLSENYIHYYVDSMYALFIYSTDIPLKAEPLVP 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,538
Number of Sequences: 5004
Number of extensions: 42303
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)