Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b20
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 83  VNKSSGRFPGIVIIIILAEFCERFSYS 163
           +N+     PGI I + + + C R +Y+
Sbjct: 5   INRDEDILPGITIGVHILDTCGRDTYA 31


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 123 IITIPGKRPELLFTPLLVPNDFSSVIFXK*QLDP 22
           +I+ PG+    L    ++P   SS+I    QLDP
Sbjct: 95  LISFPGELLMRLLKMFILPLIVSSLISGMAQLDP 128


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 83  VNKSSGRFPGIVIIIILAEFCERFSYS 163
           +N+     PGI I + + + C R +Y+
Sbjct: 95  INRDEDILPGITIGVHILDTCGRDTYA 121


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 323 LYMMFVYAAGNILVAI 370
           L ++F+  AGNILV +
Sbjct: 33  LILIFLSVAGNILVCV 48


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 334 HHIQNCPEFSKVI 296
           HH  +CPE  K I
Sbjct: 471 HHWHHCPEIYKAI 483


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 356 ILVAITAIPHFALPGRLCTL 415
           + + + + P+FA P RL T+
Sbjct: 800 VQLKVNSSPYFAAPSRLVTV 819


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 356 ILVAITAIPHFALPGRLCTL 415
           + + + + P+FA P RL T+
Sbjct: 796 VQLKVNSSPYFAAPSRLVTV 815


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,484
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)