Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23b18
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.2
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 4.2
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.2
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.2
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 25 5.6
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.3
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 9.7
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 9.7
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 9.7
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -3
Query: 208 GFSRRGIVISVKYNRLPNKRLLIILSLFAHFSSYLRYMCSLCTVTTHIHCSFAKNYAKYH 29
GFS +VISV + L IL + F+ L CS+ + T H F A YH
Sbjct: 15 GFSLCTLVISVPFFFLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHF--TIACYH 72
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 294 ASCRRPASNKTSYGLMPFHVTLDGSPPLGGFPGAASLSP 178
AS +R S +S ++ + TLD P L PG +S +P
Sbjct: 150 ASYQRSNSKNSSASILQMNTTLDDIPILLRRPGLSSYTP 188
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 339 SASALWATAAREQHPASCRRPASNKTSYGLMPFHVTLDGSPPLGGFPGAASLSP 178
SAS L + P RRP + + G ++ S LGG PG + +P
Sbjct: 161 SASILQMNTTLDDIPILLRRPGLSSYTPGPSTSRRSISSSSNLGGNPGLIANNP 214
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 336 PSGSAVARAPPTTRFQRHAQPRVSEL 413
PS S +A APP+ R R PR + L
Sbjct: 683 PSASNMANAPPSVRNNRVLNPRGASL 708
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 291 SCRRPASNKTSYGLMPFHVTL-DGSPPLG 208
S R P + SYG P H L +G P +G
Sbjct: 162 SQRAPLNTSDSYGFTPLHFALAEGHPDVG 190
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 123 ANSDKIIKSLLFGSRLYFTEITMPRLEN 206
A + + S+LFG RLY + I + LEN
Sbjct: 81 AKQSESLGSVLFGDRLYNSPIEIKMLEN 108
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 282 AGMTPDVAREPQSPTARRPSGSAVARAPPTT 374
AG T P + RP +AV R PT+
Sbjct: 34 AGQTKPATTRPMAEARARPGATAVPRRSPTS 64
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 297 DVAREPQSPTARRPSGSAVARAPPTTRFQRH 389
D QSPT+ PS +P T Q H
Sbjct: 91 DSGNSSQSPTSPHPSNQPAMLSPSTAASQHH 121
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 151 RLLIILSLFAHFSSYLRYMCSLCTVT--THIHCSFAKNYAKYHVQTLR 14
RL ++ ++ + S + +C +C + T + CS YA YH+ R
Sbjct: 288 RLDLVRNIASIPKSRWKLVCCICKLRWGTCVQCSDKNCYAAYHITCAR 335
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 252 LMPFHVTLDGSPPLGGFPGAASLS 181
L P+ V +G P +G P A SLS
Sbjct: 365 LHPYSVPENGKPNMGRIPSAPSLS 388
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 265 NKLWLNAFSRNTRRKSSVGGFSRRG 191
NK+++NA N+R+K G G
Sbjct: 24 NKIYMNADQNNSRKKEMDGSLQNNG 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,460
Number of Sequences: 5004
Number of extensions: 39441
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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