Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b14
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    44   2e-05
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    40   5e-04
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    35   0.014
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    31   0.17 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.68 
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    29   0.89 
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        29   0.89 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   1.6  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    27   2.1  
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    27   2.7  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   2.7  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   6.3  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   6.3  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    26   6.3  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
 Frame = +2

Query: 416  SSAPEAVVNLTLLWASYLARDELLPGVLDAGADIHYSDSSGLTALHLSAFSGAGRAAVFL 595
            S+  +  V  T+L A  L  D   P +    +D    + SG + LHL+A  G   A+ FL
Sbjct: 826  SNQSDDSVESTILAAFALVTDTTTPYL----SDFSLVNESGRSLLHLTAACGLSNASTFL 881

Query: 596  ISRGADVDFVPKY-FTPLHCAAFGNSLEVAEILIANGA 706
             + G DV+      +TPLH A+  +  ++   L++NGA
Sbjct: 882  CNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGA 919


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 512 DIHYSDSSGLTALHLSAFSGAGRAAVFLISRGADVDFV--PKYFTPLHCAAFGNSLEVAE 685
           D++ +D  G TALH +A +       FL+  GADV+ +       P+H AA   S++   
Sbjct: 26  DVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVH 85

Query: 686 ILIANGA 706
            L+ +GA
Sbjct: 86  YLVQHGA 92



 Score = 33.1 bits (72), Expect = 0.042
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 449 LLWASYLARDELLPGVLDAGADIHYSDSSGLTALHLSAFSGAGRAAVFLISRG 607
           L+WASY   + +   +L  GAD+  +D   +T LH S   G  +    ++  G
Sbjct: 138 LMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEG 190



 Score = 31.9 bits (69), Expect = 0.096
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 455 WASYLARDELLPGVLDAGADIHYSDSSGLTALHLSAFSGAGRAAVFLISRGADVDF-VPK 631
           WA+     + +  ++  GAD    D  G   LHL+  + +    V+L+     VD    +
Sbjct: 74  WAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVYLLHLDISVDLRDDQ 133

Query: 632 YFTPLHCAAFGNSLEVAEILIANGASL 712
             TPL  A++  +  +   L+  GA +
Sbjct: 134 QHTPLMWASYHGNEPITNCLLRWGADV 160


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
 Frame = +2

Query: 323 LYERALTLGA-GRFFDDLECGLITAENIEEHISSAPEAVVNLTLLWASYLARDELLPGVL 499
           +++  LTL   G   + L   L++A++ +E  S+ P  V  L L        D ++  ++
Sbjct: 298 MHDTPLTLAIKGNHVEALHA-LLSAQD-KETTSTKPGPVPPLVLT-CCVGDYDLIVEELI 354

Query: 500 DAGADIHYSDSSGLTALHLSAFSGAGRAAVFLISRGADV---DFVPKYFTPLHCAAFGNS 670
            AG + +  D+S  TALH +           L+  GA+    DF+  + TPL  A+    
Sbjct: 355 LAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSW-TPLMLASATGL 413

Query: 671 LEVAEILIANGASLXGV 721
            E+  IL+A+GAS+  V
Sbjct: 414 SEIVSILVASGASVDEV 430


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 221 PSPPADDAPNMYHSFDVLAPDPDARLTDD 307
           PSPP+   PNMY S +   P P A  TD+
Sbjct: 136 PSPPSTYYPNMYVSANTFIPMPYAHYTDN 164


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 6/185 (3%)
 Frame = -2

Query: 726 CTTPXNEAPFAISISATSNEFPNAAQ*RGVKYLGTKSTSAPRDIRNTAALPAPLKADKCK 547
           CT   +   ++ +IS+TS             Y  T S+S P    ++++      + K  
Sbjct: 114 CTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSS 173

Query: 546 AVKPDESE**ISAPASKTPGNNSSRAKYEAHSKVKF-TTASGAELMCSSMFSAV-----I 385
           +     S    S+ +SK+  ++SS +K  + S     ++AS +    SS FS+       
Sbjct: 174 SSSKSSSS---SSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITST 230

Query: 384 KPHSKSSKNLPAPRVRALSYNPLLAASSVNLASGSGARTSKLWYMFGASSAGGEGPTKRY 205
            P S SS        +  S +   +ASS   +  S   ++       ASSA     +   
Sbjct: 231 TPASSSSSGAIVSNAKTASTDDSSSASSATSSVSSVVSSASSALSASASSASASVSSSAS 290

Query: 204 SLAFP 190
           S A P
Sbjct: 291 SDASP 295


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 20/78 (25%), Positives = 40/78 (51%)
 Frame = -2

Query: 513 SAPASKTPGNNSSRAKYEAHSKVKFTTASGAELMCSSMFSAVIKPHSKSSKNLPAPRVRA 334
           S+ +S  P ++SS +   +  K   ++ S +  + S+ +       S+SS +  +  + +
Sbjct: 386 SSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN--STSSRSSSHSSSHSLSS 443

Query: 333 LSYNPLLAASSVNLASGS 280
           LS  P+L ASS +L + S
Sbjct: 444 LSSKPILTASSSSLLTSS 461


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 497 LDAGADIHYSDSSGLTALHLSAFSGAGRAAVFLISRGADVD 619
           LD+G   + +D +G T +H +   G       L+ RG D++
Sbjct: 24  LDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDIN 64


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 458 ASYLARDELLPGVLDAGADIHYSDSSGLTALHLSAFSGAGRAAVFLISRGAD 613
           A+ + + +++  ++   A ++ SDS G T LH +   G     V L+  GAD
Sbjct: 148 AAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGAD 199


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -2

Query: 441 FTTASGAELMCSSMFSAVIKPHSKSSKNLPAPRVRALSYNPLLAASSVNLASGS 280
           F   S A+L  +   S++IK H+ SS + P  R   + Y P L  SS  LAS S
Sbjct: 41  FKNFSFAKLGRNQRTSSLIKIHN-SSTSFPKSRSEKVVYTPSLPLSSSVLASFS 93


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -2

Query: 357 LPAPRVRALSYNPLLAASSVNLASGSGARTSKLWYMFGASS--AG-GEGPTKRYSLAFPG 187
           +P   +RAL + PL+    VN        +  +  + G  +  AG GEG  + YSLA+  
Sbjct: 217 IPKSDLRALMFVPLVRRRVVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQ 276

Query: 186 SRADSSKSMFFTCLY 142
           S   + K+M +   Y
Sbjct: 277 SCGRAVKNMVYIPRY 291


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 515 IHYSDSSGLTALHLSAFSGAGRAAVFLISRGADVDFVPKY-FTPLHCAAFGNSLEVAEIL 691
           I+  + SG TA+H +A +G       L+  G D      Y  +P++ A   N  +V ++ 
Sbjct: 64  INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDLF 123

Query: 692 I 694
           +
Sbjct: 124 L 124


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 342 VRALSYNPLLAASSVNLASGSGARTSKLW 256
           V A S+NP     S  LASGSG RT ++W
Sbjct: 510 VWACSFNPF----SRQLASGSGDRTIRIW 534


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 578 RAAVFLISRGADVDFVPKYFTPLHCAAFGNSLEVAEILIANGASL 712
           + AV  ++ GADV+    Y   +  A   N+  +AE+L  NGASL
Sbjct: 806 KEAVLCLALGADVN----YQRAVVKALLKNNYLIAELLTLNGASL 846


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 464 YLARDELLPGVLDAGADIHYSDSSGLTALHLSAFSGAGRAAVFLISRGADVDFVPKYFTP 643
           Y A +E  PG         ++  +GL  LHLS FS +   +  L     +V+  P Y   
Sbjct: 43  YCASEEQTPGSTGLTLQELFTIQTGLPTLHLS-FSSSCSYSENLHDGDGNVNSSPVYSLF 101

Query: 644 LHCAAFGNSLEV 679
           L C    N++ +
Sbjct: 102 LACVCQDNTVRL 113


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 354 PAPRVRALSYNPLLAASSVNLASGSGART 268
           P PR RA+++  +   S+++   GSG  T
Sbjct: 661 PMPRFRAINFESITVESNLSTQCGSGVLT 689


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 557 TNVRQSNLTNPSSEYPPQRPKLRVITHPAPNT 462
           T +RQ    + SSE+PP+  K + +    PNT
Sbjct: 109 TTMRQGRFPSSSSEFPPKNSKYQ-LPGSMPNT 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,594
Number of Sequences: 5004
Number of extensions: 67880
Number of successful extensions: 209
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)