Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b11
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   3.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   5.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   7.5  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    23   9.8  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    23   9.8  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 76  AFNVLSVIFEYRSNRSLRFLIVELFIHTFYYYFGITI 186
           AF +L  IF   ++ S+  ++ E+F+HT Y   GI +
Sbjct: 349 AFRILFSIF--MASMSVIIVVSEVFLHTQYSLVGIIL 383


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 113  DLYSKMTLNTLKASLKRRRT 54
            D+ +  T+N+L   LKRRRT
Sbjct: 2228 DILNSSTINSLIRKLKRRRT 2247


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 68   KRRRTHLTLPKSGPRDRDRHRV 3
            K R +H+  PKS   D+D+  V
Sbjct: 1004 KERESHILFPKSSQYDKDQASV 1025


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 137 IKNLNDRFDLYSKMTLNTLKASL 69
           +   ND+++L   +TL  L ASL
Sbjct: 22  VSRFNDKYELQPLLTLGLLNASL 44


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   RGVCRDPLVPTLGGSNVSAS 64
           RG   +P+VP+L G  +S+S
Sbjct: 205 RGHLMNPMVPSLAGGKMSSS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,983
Number of Sequences: 5004
Number of extensions: 21110
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)