Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b11
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0845 + 6866211-6867143                                           26   6.7  
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419...    26   6.7  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    26   6.7  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    26   8.9  
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846...    26   8.9  
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916     26   8.9  
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779...    26   8.9  

>07_01_0845 + 6866211-6867143
          Length = 310

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 19  RSLGPDFGRVKCVRLRFRLAFNVLSVIFE--YRSNRSLRFLIVELFI 153
           R + PDFGR+     R RL   + S I+E   R  R  R++++  FI
Sbjct: 131 RHVAPDFGRLAAAAGRSRLT-ELESSIWESALRGERERRYVVMPSFI 176


>06_03_1338 -
           29440373-29440534,29440993-29441083,29441799-29441942,
           29442094-29442159,29442589-29442729,29443077-29443178,
           29443264-29443338,29443469-29443549,29443670-29443739,
           29444063-29444139,29444392-29444660
          Length = 425

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 130 FLIVELFIHTFYYYFGITIVCR 195
           FL++  FI   YYYF  + VCR
Sbjct: 107 FLLMPGFIQVVYYYFFSSQVCR 128


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 124 LRFLIVELFIHTFYYYFG-ITIVCRVTTDLC*DI 222
           L F++  +++H FYY FG + +V  +    C +I
Sbjct: 535 LFFILTSIWLHQFYYIFGFLFLVFAILVVTCAEI 568


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 124 LRFLIVELFIHTFYYYFG 177
           L F++  +++H FYY FG
Sbjct: 511 LFFILTSIWLHQFYYIFG 528


>08_02_1543 +
           27783063-27783182,27784321-27784485,27784577-27784686,
           27784771-27784876,27784952-27785050,27785450-27786607
          Length = 585

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 124 LRFLIVELFIHTFYYYFG 177
           L F++  +++H FYY FG
Sbjct: 461 LFFILTSIWLHQFYYIFG 478


>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 77  ASLKRRRTHLTLPKSGPRDRDRH 9
           A L  +R     P SG RDRDRH
Sbjct: 76  APLADKRHRPNPPSSGSRDRDRH 98


>03_02_0359 -
           7788382-7788522,7788931-7789837,7791227-7791337,
           7791437-7791507,7791582-7791659,7792564-7792770,
           7792867-7793046,7793249-7793471,7794133-7794453,
           7794538-7795109
          Length = 936

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 86  TLKASLKRRRTHLTLPKS 33
           T+K+ L+ RR HL LPK+
Sbjct: 265 TVKSHLQNRRNHLILPKA 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,803,738
Number of Sequences: 37544
Number of extensions: 117632
Number of successful extensions: 259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)