Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b11
         (342 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M74547-1|AAA36397.1|  935|Homo sapiens p107 protein.                   28   6.6  
L14812-1|AAA02489.1| 1068|Homo sapiens p107 protein.                   28   6.6  
BC032247-1|AAH32247.1| 1014|Homo sapiens retinoblastoma-like 1 (...    28   6.6  
AL391114-2|CAI95152.1| 1014|Homo sapiens retinoblastoma-like 1 (...    28   6.6  
AL391114-1|CAI95151.1| 1068|Homo sapiens retinoblastoma-like 1 (...    28   6.6  
AL365505-2|CAI95178.1| 1014|Homo sapiens retinoblastoma-like 1 (...    28   6.6  
AL365505-1|CAI95177.1| 1068|Homo sapiens retinoblastoma-like 1 (...    28   6.6  
AL136172-4|CAI95717.1| 1014|Homo sapiens retinoblastoma-like 1 (...    28   6.6  
AL136172-3|CAI95716.1| 1068|Homo sapiens retinoblastoma-like 1 (...    28   6.6  

>M74547-1|AAA36397.1|  935|Homo sapiens p107 protein.
          Length = 935

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 376 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 418


>L14812-1|AAA02489.1| 1068|Homo sapiens p107 protein.
          Length = 1068

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


>BC032247-1|AAH32247.1| 1014|Homo sapiens retinoblastoma-like 1
           (p107) protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


>AL391114-2|CAI95152.1| 1014|Homo sapiens retinoblastoma-like 1
           (p107) protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


>AL391114-1|CAI95151.1| 1068|Homo sapiens retinoblastoma-like 1
           (p107) protein.
          Length = 1068

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


>AL365505-2|CAI95178.1| 1014|Homo sapiens retinoblastoma-like 1
           (p107) protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


>AL365505-1|CAI95177.1| 1068|Homo sapiens retinoblastoma-like 1
           (p107) protein.
          Length = 1068

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


>AL136172-4|CAI95717.1| 1014|Homo sapiens retinoblastoma-like 1
           (p107) protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


>AL136172-3|CAI95716.1| 1068|Homo sapiens retinoblastoma-like 1
           (p107) protein.
          Length = 1068

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  VIFEYRSNRSLRFLIVELFIHTFYYYFGITIVCRVTTDLC*DI 222
           V+F Y S R+  ++I  L +  FY+Y  I +V R    L  D+
Sbjct: 509 VLFAYSSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDM 551


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,171,430
Number of Sequences: 237096
Number of extensions: 651626
Number of successful extensions: 1230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)