Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b11
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF353303-1|AAK32717.1|  367|Caenorhabditis elegans GATA-like tra...    27   3.5  
AF100657-1|AAC68957.3|  367|Caenorhabditis elegans Erythroid-lik...    27   3.5  
U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    26   6.1  
U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin ...    26   8.1  

>AF353303-1|AAK32717.1|  367|Caenorhabditis elegans GATA-like
           transcription factorELT-6 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 155 CMNSSTIKNLNDRFDLYSKMTLNTLKASLKRRRTH 51
           C N STIK    R DL  K+  N      +  RTH
Sbjct: 265 CSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTH 299


>AF100657-1|AAC68957.3|  367|Caenorhabditis elegans Erythroid-like
           transcription factorfamily protein 6 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 155 CMNSSTIKNLNDRFDLYSKMTLNTLKASLKRRRTH 51
           C N STIK    R DL  K+  N      +  RTH
Sbjct: 265 CSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTH 299


>U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical
           protein F58F12.3 protein.
          Length = 463

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 204 CRHAANNGNPKIIIECMYE*FN 139
           C HA  N   K+ +E MY  FN
Sbjct: 357 CEHAGANRTSKVYLEAMYSIFN 378


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 149 NSSTIKNLNDRFDLYSKMTLNTLKASLKRRRTHLTLPKSGPRDRDR 12
           +S +++++ND FD+       T+ +S  R R H  LP +  +  ++
Sbjct: 494 SSESLEDMNDIFDINENFMDTTMTSSSTRSRAH-ALPNAETKSSNK 538


>U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin
           protein 5 protein.
          Length = 419

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 38  LGGSNVSASVLDWPSTC*ASFSNIDQ-IGH*DF*LLNYSYIHSIIILG 178
           +G S  S+SV +W     + ++NIDQ  GH     L  +Y  S++ +G
Sbjct: 220 IGASWPSSSVFNWLDGSNSDYTNIDQSFGHGGNCALLSNYQPSVVPMG 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,069,619
Number of Sequences: 27780
Number of extensions: 117314
Number of successful extensions: 246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)