Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23b11
(342 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 24 0.44
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 7.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 7.2
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 20 7.2
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 20 9.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 20 9.5
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 24.2 bits (50), Expect = 0.44
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 145 LFIHTFYYYFGITI 186
+F+HTF YFG+ I
Sbjct: 174 MFVHTFGAYFGLAI 187
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 188 IQIRRRTLYYFFNLIVPC 205
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 188 IQIRRRTLYYFFNLIVPC 205
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 188 IQIRRRTLYYFFNLIVPC 205
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 188 IQIRRRTLYYFFNLIVPC 205
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 188 IQIRRRTLYYFFNLIVPC 205
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 188 IQIRRRTLYYFFNLIVPC 205
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 256 IQIRRRTLYYFFNLIVPC 273
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 7.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Frame = +1
Query: 139 VELFIHTFYYYFGITIVC 192
+++ T YY+F + + C
Sbjct: 256 IQIRRRTLYYFFNLIVPC 273
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 20.2 bits (40), Expect = 7.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 14 CRDPLVPTLGGSNVSASVLDWPST 85
CRD L P L +S ++L P T
Sbjct: 116 CRDRLNPNLFIYALSVAILHRPDT 139
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 19.8 bits (39), Expect = 9.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 134 KNLNDRFDLYSKMTLNTLKASLKRRRTHLTL 42
+N +D F S TLN + ++ +LTL
Sbjct: 215 QNADDSFHRLSSHTLNHNSDKMSDQQENLTL 245
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 19.8 bits (39), Expect = 9.5
Identities = 5/12 (41%), Positives = 8/12 (66%)
Frame = +1
Query: 157 TFYYYFGITIVC 192
T YY+F + + C
Sbjct: 231 TLYYFFNLIVPC 242
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,718
Number of Sequences: 438
Number of extensions: 1810
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7839909
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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