Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23b08
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 67 2e-12
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 62 7e-11
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 45 9e-06
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 42 6e-05
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 42 8e-05
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 36 0.006
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 29 0.48
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 27 1.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 2.0
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 27 2.0
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 6.0
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 6.0
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 25 7.9
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 66.9 bits (156), Expect = 2e-12
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Frame = +3
Query: 201 SPLKIVRGIAQFMYDETGERYLDCINNV--AHVGHCHPHVVEA-GRNQMSLISTNNRYLH 371
+P IVR +YDE LD + A +GH HP + +N L+ + +L
Sbjct: 32 APKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLS 91
Query: 372 DELVILAQRLVNTLPESLSVCFFVNSGSEANDLALRMARIHTKKKDVITLDHAYHG 539
+V LA L + LP+ L F+++G EAN+ ALRMA+++T K + + ++HG
Sbjct: 92 PPVVQLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHG 147
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 61.7 bits (143), Expect = 7e-11
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Frame = +3
Query: 162 KHVGAACQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA--HVGHCHPHVVEAGRNQ 335
K GA + P+ +G +++D+ G +Y+D + VA +GH HP V +Q
Sbjct: 41 KKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQ 100
Query: 336 MS-LISTNNRYLHDELVILAQRLVNTLPESLSVC-----FFVNSGSEANDLALRMAR--- 488
S L+ ++N + ++ + L+ + N+L ++ + FF N G+EAN+ AL+ AR
Sbjct: 101 CSKLVHSSNLFYNEPAIELSNVINNSLAKNSGIAGPTKIFFANCGTEANETALKFARKAA 160
Query: 489 ---IHTKKKDVITLDHAYHGHLTTMIDIS 566
K ++ ++++HG + I+
Sbjct: 161 FEKYGEGKSQIVYFNNSFHGRSLGSLSIT 189
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 44.8 bits (101), Expect = 9e-06
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +3
Query: 237 MYDETGERYLDCINNVAHV--GHCHPHVVEAGRNQMSLISTNNR-YLHDELVILAQRLVN 407
++D G YLD ++ + V GHCHP ++EA Q ++ ++R + +D+ A+ +
Sbjct: 43 VWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSRAFYNDKFGPFAKYITE 102
Query: 408 TLPESLSVCFFVNSGSEANDLALRMARIHTKKKDVITLDHA 530
+ + +N+G+EA + A ++AR+ K I D A
Sbjct: 103 YFGYEMVIP--MNTGAEAVETACKLARLWGYKAKKIPTDEA 141
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 41.9 bits (94), Expect = 6e-05
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Frame = +3
Query: 204 PLKIVRGIAQFMYDETGERYLDCINN--VAHVGHCHPHVVEAGRNQMSLISTNNR--YLH 371
P +VR ++Y E G R +D VA +GH + V++A Q + + + +
Sbjct: 28 PPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYIHSMGFSN 87
Query: 372 DELVILAQRLVNTLPESLSVCFFVNSGSEANDLALRM 482
+ LA LV+ P+ + +F NSGSEA + L++
Sbjct: 88 EPADKLANLLVSEHPDVFARAYFANSGSEAVETCLKL 124
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 41.5 bits (93), Expect = 8e-05
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +3
Query: 204 PLKIVRGIAQFMYDETGERYLDCINNVAH--VGHCHPHVVEAGRNQMSLISTNNRYLHDE 377
P+ I G + D G Y D +N + GH +P + +A I +
Sbjct: 52 PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEIGISLGGTTTC 111
Query: 378 LVILAQRLVNTLPESLSVCFFVNSGSEANDLALRMARIHTKKKDVITLDHAYH-GHLTTM 554
+ A+ L + S+ F NSG+EAN A+ AR T K+ VI + YH G L+
Sbjct: 112 ELNYAEALKSRFL-SIEKIRFCNSGTEANITAIIAARKFTGKRAVIAMHGGYHGGPLSFA 170
Query: 555 IDISPY 572
ISPY
Sbjct: 171 HGISPY 176
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 35.5 bits (78), Expect = 0.006
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Frame = +3
Query: 204 PLKIVRGIAQFMYDETGERYLDCINNVAHV--GHCHPHVVEAGRN-QMSLISTNN----R 362
P+ + I ++ D G LD + +A + G+ +P +++A ++ +++ I N
Sbjct: 52 PVDYEKSIGNYLVDLDGNVLLDVYSQIATIPIGYNNPTLLKAAKSDEVATILMNRPALGN 111
Query: 363 YLHDELVILA-QRLVNTLPESLSVCFFVNSGSEANDLALRMARIH 494
Y E +A + + P+ +F SGS+AN++A ++A +H
Sbjct: 112 YPPKEWARVAYEGAIKYAPKGQKYVYFQMSGSDANEIAYKLAMLH 156
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 29.1 bits (62), Expect = 0.48
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 213 FSRGKNGKTVGTPLQHVSREVEWFQIWALIVNKPL*TTV*SYL 85
+S KN TVG LQ ++ V W I LIVN+P + S+L
Sbjct: 199 YSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFL 240
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 456 EANDLALRMARIHTKKKDVITLDHA 530
E N LAL R +KKKDVIT+DH+
Sbjct: 348 EENLLALAAKR--SKKKDVITVDHS 370
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 320 LNNMWMTMADMGNVVDAVEIPFAGFVIHELCYSSHYFQGGRTEKQLARRSNMFLAK 153
L+N+W + + D V A + I LC S Y+Q TE + RSN+ + K
Sbjct: 1432 LHNLWKPHLQLNCLSDEV----AQYYI-TLCKGSFYYQMRNTEDMVISRSNLDIQK 1482
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 180 CQLFFRSSPLKIVRGIAQFMYDETGERYLDCINNVA 287
C + F S +I ++ + + E G+R ++C+NN++
Sbjct: 422 CVVAFEFSSEEIPSNLSNY-FQEVGDRTIECLNNIS 456
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 96 IQSFTMAYLQSMPKSETIQLR-EKHVGAACQLFFR 197
+ F+ AY++ PK E +QL+ + V Q FF+
Sbjct: 997 LNEFSTAYVEVTPKEEQMQLKTDDAVSIVVQHFFK 1031
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -3
Query: 447 SLRRSKRTMILVMYSRAFVLE*LARREDSGCLSILETFDFYQPQQHVDDNGRHG 286
+LR + R +L+ S ++ L R D+G L F F P +D N R G
Sbjct: 393 ALRYNLRISLLLTASSDTTVK-LWSRGDAGAFECLHVFSFSSPVNCIDWNLREG 445
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.0 bits (52), Expect = 7.9
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Frame = +3
Query: 243 DETGERYLDCI---------NNVAHVGHCHPHVVEAGRNQMSLISTNNRYLHDELVILAQ 395
DE G +LD I NN +V C +A M IS N +
Sbjct: 85 DEKGTEHLDLIGGVGVVTVGNNNQYVWDCLQKCFDAKLYMMGAISYRNL-----AAAFGR 139
Query: 396 RLVNTLP-ESLSVCFFVNSGSEANDLALRMARIHTK----KKDVITLDHAYHGHLT 548
+ P + L+ + G+EAN+ +++ R+ T+ KK ++ +++HG T
Sbjct: 140 NMALLSPGQKLTRTWTATGGAEANEGVIKLIRLATRYKPNKKKFLSTLNSFHGKTT 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,494
Number of Sequences: 5004
Number of extensions: 47163
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -