Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b03
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.8  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   5.4  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   5.4  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.2  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   9.5  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 266 NPVLSHG-GLLLDRYGEPPRLREAILRC 346
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 110 NSPHLNFSYNHRFFDDTQKNMR 45
           +SP+++F+Y+   F D QK +R
Sbjct: 95  SSPNMDFTYSINSFGDYQKQLR 116


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 171 VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 257
           +S  +++  ++  EQ  Y   +KQ QEE+
Sbjct: 39  LSDASVKSSYVDQEQQAYENWKKQEQEEI 67


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 186 IRDEW---LTMEQTCYNMMRKQIQEEVAASIQYLAMGA 290
           +RD++   LTM Q C N+  KQ    + A  Q L+ G+
Sbjct: 341 LRDQYSLHLTMAQECMNIFEKQQLNLIGAIEQDLSTGS 378


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 137 SNESEDSKENSPHLNFSYNHRFFDDTQK 54
           SN+     +NSP  +FS N+  F++ Q+
Sbjct: 175 SNQFNKPTQNSPFNSFSNNNNSFNNNQQ 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,676
Number of Sequences: 5004
Number of extensions: 27178
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)