Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23b03
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 1e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 2e-07
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 1.7
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 28 3.1
01_06_1124 - 34679205-34680926,34681438-34682811 27 5.3
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 27 7.1
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 27 9.3
05_05_0221 - 23385626-23386702 27 9.3
03_02_1015 + 13225092-13225625 27 9.3
01_03_0163 + 13346586-13347809 27 9.3
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 56.0 bits (129), Expect = 1e-08
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +3
Query: 219 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 398
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 399 RG---KLTGSVTDLITYRAP 449
RG +L VT L + P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 252 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 422
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 423 TDLITYRAP 449
T L + P
Sbjct: 194 TPLTEFDHP 202
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 279 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 395
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 200 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 51
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 263 VNPVLSHGGLLLDRYGEPPRLREA 334
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 239 TDPGGSGRVNPVLSHGGLLLDRYGEPP 319
T G S +P HGGLL YGE P
Sbjct: 185 TSVGASAAADPSPVHGGLLAPVYGEFP 211
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 201 LTMEQTCYNMMRKQIQEEVAASIQYLAMGA-YFSIDTVNRPGFAKLF 338
L + Q N M ++Q ++ YL A +FS + +N+PGF ++
Sbjct: 124 LEIAQLGRNCMSARLQLTISKRSHYLVTFACWFSENVMNKPGFVDIY 170
>05_05_0221 - 23385626-23386702
Length = 358
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 254 SGRVNPVLSHGGLLLDRYGEPPRLREAILRCCD 352
S V L HG L +G L ILRCCD
Sbjct: 36 SAAVLEALLHGASLPPAHGGAHALAAEILRCCD 68
>03_02_1015 + 13225092-13225625
Length = 177
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 263 VNPVLSHGGLLLDRYG-EPPRL 325
V P +S+GG++LDR PPRL
Sbjct: 90 VRPFMSNGGMMLDRVPIAPPRL 111
>01_03_0163 + 13346586-13347809
Length = 407
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 209 GADLLQHDEETDPGGSGRVNPVLSHGGL 292
G DL Q E PGGS V + HG L
Sbjct: 163 GLDLQQQQEHVPPGGSDAVVVPVGHGVL 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,641
Number of Sequences: 37544
Number of extensions: 222573
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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