Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b03
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    52   2e-07
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    46   1e-05
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    27   4.8  
AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 27/58 (46%), Positives = 35/58 (60%)
 Frame = +3

Query: 231 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 404
           + KQI  E+ AS  YL+M  YF  D V  P  AK F + + EEREHAT+L+    +RG
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG 73


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 24/58 (41%), Positives = 34/58 (58%)
 Frame = +3

Query: 231 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 404
           + KQI  E+ AS  YL+M A+F  D +     AK F + + EER HAT+L+    +RG
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG 73


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 89  SYNHRFFDDTQKNMRS*KQ*LYKSSLY 9
           SYNHRFF    K++ S K+ LYK+ ++
Sbjct: 99  SYNHRFF--IHKDISSDKKFLYKNDIF 123


>AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical
           protein ZC581.3 protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = -2

Query: 251 LLDLFPHHVVASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRF 72
           LL+L P ++V S    E L   G+   +   +  R      SEDS EN+P  NF Y+   
Sbjct: 460 LLNLTPPNIVNSN-ESEDLEESGEEIQIETTTLKRK---VFSEDSMENTPP-NFFYSSNR 514

Query: 71  FDDTQKN 51
           +D T ++
Sbjct: 515 YDSTTRS 521


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 188 DGDGADVTLCSCGRS*GSNESEDSKENSPHLNFS-YNHR 75
           D D +D T+   G +     SED   N P+++ + +NHR
Sbjct: 259 DDDPSDTTIDHTGHNHRRRRSEDHDPNDPNVDHTGHNHR 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,818,637
Number of Sequences: 27780
Number of extensions: 161924
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)