Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23b01
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.73 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   0.96 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    28   1.3  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.3  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    27   2.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   2.9  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   5.1  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   6.8  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 229 ISIVGKNLILSKWKV---NPLCYYLTTFDSFCYKIL 327
           +S + KN +L   K+    P+C+ +T + SF Y IL
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAIL 383


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 362 FRSIR--IGVSFHGTSTPPPSSLLFNVTYCVC--APLVLIPFVC 481
           FRSI     +  H      P++ + NV + +C  APL L+ F+C
Sbjct: 173 FRSINRDADIDIHDEPLKRPNTSISNVIWLICFGAPLFLVIFIC 216


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 371 IRIGVSFHGTSTPPPSSL-LFNVTYCVCAPLVLIPFVCGP 487
           I  G+++H TST  P ++ +  +    CA L+ I F+  P
Sbjct: 170 IAFGINYHSTSTGVPMAVYIIFIIIMACAVLLAILFIKSP 209


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 625 LKWHKFY*IYKQINYYICTSLLYKKIIHIALN 530
           L+ HKF  +Y  ++Y+ C +  +  ++H+ +N
Sbjct: 619 LRMHKFLSVYSFMDYHSCHAASFIILVHLLIN 650


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 547 LFFCIIMKYICNNLFVYKSNKTYAI 621
           LF C+++  + + L V+K  + YAI
Sbjct: 99  LFVCVVLMLVGSTLVVFKKRQAYAI 123


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 214 LSHLHKYNYNAVSINL 167
           +S+LH Y YNA++INL
Sbjct: 189 VSNLHGYTYNALNINL 204


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 335 HTENKCFFIFRSIRIGVSFHGTSTPPPSSLL 427
           H++ K  FI R + I V FH     P  SLL
Sbjct: 404 HSKRKLRFINRFLSISVPFHSPYLAPVRSLL 434


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 359 IFRSIRIGVSFHGTSTPPPSSLLFNVTYCVCAPLVLIPFV 478
           +F+ +R  +S    S     S L  +TYC  A  VL PF+
Sbjct: 462 LFKRVRFLLSESLKSGLFSESSLLQMTYCALAARVLAPFI 501


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 44  NVYSVSASSQPEATPRSLAPCTFINVINV*KNLTNSVKRIN 166
           N+Y       PE T +S+ PCT + ++ + + L    K IN
Sbjct: 132 NMYHNIRHLDPEKTKKSILPCTPLAIVKILEYLGVYNKIIN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,708
Number of Sequences: 5004
Number of extensions: 51502
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)