Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23b01
(626 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 25 0.46
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 24 1.1
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 24 1.1
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 24 1.1
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 24 1.1
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 5.6
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 7.4
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 7.4
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 7.4
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 21 9.8
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 9.8
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 9.8
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.8
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.8
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 25.4 bits (53), Expect = 0.46
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 10 REKKNHWKIPKKCVFC 57
R KKN +P +CVFC
Sbjct: 28 RRKKNKKPLPTECVFC 43
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 226 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 113
NN + ++ +KYNYN + N L Y+ N + I + +YY N
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 226 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 113
NN + ++ +KYNYN + N L Y+ N + I + +YY N
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 226 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 113
NN + ++ +KYNYN + N L Y+ N + I + +YY N
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.2 bits (50), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 226 NNILLSHLHKYNYNAVSIN--LIYSFNRVS*IFL--NIYYIN 113
NN + ++ +KYNYN + N L Y+ N + I + +YY N
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGN 128
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 202 HKYNYNAVSINLIYSFNRVS*IFL--NIYYIN 113
+KYNYN L Y+ N + I + +YY N
Sbjct: 96 YKYNYNNNCKKLYYNINYIEQIPIPVPVYYGN 127
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 226 NNILLSHLHKYNYNAVSIN 170
NN + ++ +KYNYN + N
Sbjct: 86 NNTIHNNNYKYNYNNNNYN 104
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 226 NNILLSHLHKYNYNAVSIN 170
NN + ++ +KYNYN + N
Sbjct: 86 NNTIHNNNYKYNYNNNNYN 104
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 7.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 383 VSFHGTSTPPPSSLLFNVTYCVCAPLV 463
++F T PP + L+F+ C P V
Sbjct: 137 MTFDQTGIPPTTCLVFSSGSVSCVPSV 163
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 21.0 bits (42), Expect = 9.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 5 KYVRKKIIGKSQKNVYSVSASSQPEATPRSLAPCTF 112
KY RKK IG+++ + V A+ E C F
Sbjct: 38 KY-RKKCIGETKTTIEDVEATEYGEFPEDEKLKCYF 72
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +1
Query: 436 HLLCLCTSSFNPVCMRSMVVFAATIIN*FYCY 531
H+LC+ F P + M + ++I+ CY
Sbjct: 336 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCY 367
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +1
Query: 436 HLLCLCTSSFNPVCMRSMVVFAATIIN*FYCY 531
H+LC+ F P + M + ++I+ CY
Sbjct: 304 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCY 335
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 129 TFITLMNVHGASERGVAS 76
TF+TL S+RG+AS
Sbjct: 1586 TFVTLTKEGELSKRGIAS 1603
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 129 TFITLMNVHGASERGVAS 76
TF+TL S+RG+AS
Sbjct: 1582 TFVTLTKEGELSKRGIAS 1599
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,743
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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