Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23a17
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 63 3e-11
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 50 2e-07
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 48 1e-06
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 45 6e-06
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 45 8e-06
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 40 3e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 38 0.001
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 38 0.001
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 35 0.007
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.011
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 34 0.015
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.046
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 31 0.080
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 31 0.14
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 30 0.19
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.25
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 30 0.25
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 30 0.25
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 29 0.57
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 0.57
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 0.75
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 28 0.75
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 2.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.3
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 2.3
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.3
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 3.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.0
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 4.0
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.0
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 26 4.0
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 5.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 5.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.3
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 25 7.0
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 7.0
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 7.0
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 7.0
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 9.2
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 25 9.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 9.2
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 9.2
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 62.9 bits (146), Expect = 3e-11
Identities = 32/101 (31%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +3
Query: 186 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADV-TPEQVPTNIIDICIP 362
+ VR+++ G+ GVGK+SLI +L+ E+ +P I+IP++ + + V ++D
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQSD 61
Query: 363 EQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVR 485
E +A EI++A+VIC+V+S + +++ +WLP+ R
Sbjct: 62 SNEREYLAAEIKKANVICLVYS--DNYSYERVSIFWLPYFR 100
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 50.0 bits (114), Expect = 2e-07
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Frame = +3
Query: 195 RILLLGEPGVGKTSLILSLVTEEFTEHV--PPKAEEITIPADVTPEQVPTNIIDICIPEQ 368
+I++LG+ GKTSL L++ T+ + V P E V + ++ D E+
Sbjct: 15 KIVILGDGAAGKTSL-LNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
Query: 369 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCP 497
+ + HVI I F+VD +++L + T WLP V NCP
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCP 116
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 1e-06
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Frame = +3
Query: 174 ETVPRTVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIID 350
++ P +++++G+ GKTSL+ F TE+VP E V + V + D
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWD 62
Query: 351 ICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILV 527
E+ +AH+I + F++D ++L ++T W+ + CP P ILV
Sbjct: 63 TAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCP---NVPFILV 118
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 45.2 bits (102), Expect = 6e-06
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Frame = +3
Query: 195 RILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQSL 374
+++++G+ G GKT L++ + F E P E I D+T + +I++ + + +
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYI-TDITYGP-NSKVIELALWDTAG 73
Query: 375 EQVAEEIE-----RAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILV 527
++ + + ++VI + FS+D +LN + W P V+ CP R P++LV
Sbjct: 74 QEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCP---RTPIVLV 126
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 44.8 bits (101), Expect = 8e-06
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +3
Query: 189 TVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIIDICIPE 365
T++ +++G+ VGKT L++S T +F +++VP + + + E + D E
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQE 62
Query: 366 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCP 497
+ V + FSV + + W P V +CP
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCP 106
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 39.5 bits (88), Expect = 3e-04
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = +3
Query: 195 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 371
+++++G+ GKT L++ F E +VP E +V + + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 372 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILV 527
+HV+ I FSVD E+L+ + W+ V C P++LV
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS---NLPILLV 116
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 37.9 bits (84), Expect = 0.001
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = +3
Query: 195 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 371
+++++G+ GKT L++ F E +VP E +V V + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 372 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILV 527
+HVI I F+VD ++L+ + W+ V C P++LV
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSS---LPILLV 116
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +3
Query: 195 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPA-DVTPEQVPTNIIDICIPEQ 368
++LL+G+ GVGK+ L+L + +TE ++ + I ++ + V I D E+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 369 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWL 473
+ AH I IV+ V Q++ N + WL
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWL 103
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 35.1 bits (77), Expect = 0.007
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Frame = +3
Query: 165 MVYETVPRTV-----RILLLGEPGVGKTSLILSLVTEEFTEH----VPPKAEEITIPADV 317
M T P+ V +++LLG+ VGK+SL+L V ++F ++ + T+P D
Sbjct: 1 MASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDE 60
Query: 318 TPEQVPTNIIDICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCP 497
V I D E+ A+ +V+ + + +L K A W+ ++ P
Sbjct: 61 N-TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAP 118
Query: 498 E 500
E
Sbjct: 119 E 119
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 34.3 bits (75), Expect = 0.011
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +3
Query: 189 TVRILLLGEPGVGKTSLILSLV----TEEFTEHVPPKAEEITIPADVTPEQVPTNIIDIC 356
T+++ ++G+ +GKTSL+++ V EE T+ + E TI + ++ +I D+
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTI--SIRNTEITFSIWDLG 67
Query: 357 IPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYW 470
+ + + A I +F + R+ TLN I ++
Sbjct: 68 GQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWY 105
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 33.9 bits (74), Expect = 0.015
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +3
Query: 192 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPE 365
+++++LG+ GVGKT L+ V ++F+ A+ +T V + V + D +
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTA-GQ 67
Query: 366 QSLEQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILV 527
+ + + R C IV++V+ ++ + + + F+ ++ P I+V
Sbjct: 68 ERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV 122
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 32.3 bits (70), Expect = 0.046
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVP 335
ILL G PGVGKTSLI +L E + V + T D+ VP
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQLVRINLSDQTDLMDLFGSDVP 1607
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 31.5 bits (68), Expect = 0.080
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 192 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQV 332
+++++LGE GVGKTS++ V +F+ K + TI AD ++V
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFS-----KDYKATIGADFLTKEV 50
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 186 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 281
R VR+LLLG GKT+++ L+ E+ E P
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSP 46
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 30.3 bits (65), Expect = 0.19
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +3
Query: 192 VRILLLGEPGVGKTSLILSLVTEEFT-EHVPPKAEEITI-PADVTPEQVPTNIIDICIPE 365
+++LL+G+ GVGK+ L+L + FT + + I ++ +++ I D E
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 366 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVI 521
+ A I +++ V +++ + + T W V + E+ K +I
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHASENVYKILI 120
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.25
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 201 LLLGEPGVGKTSLILSLVTEEFTEHVP 281
+L+GEPGVGKTS+ L + VP
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVP 232
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.9 bits (64), Expect = 0.25
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIID 350
+L+LGE G GK++L+ +L+ + PP + +T V PE PT +I+
Sbjct: 98 VLVLGESGSGKSTLVNTLLNRDV---YPPTQKSLTGDFGVNPE--PTVMIN 143
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.9 bits (64), Expect = 0.25
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEI 299
+LL G PG GKT L ++ TE E V K E+
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPEL 724
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 28.7 bits (61), Expect = 0.57
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 186 RTVRILLLGEPGVGKTSLILSLVTEEF 266
R +++ LGE VGKTSLI + ++F
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQF 36
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.7 bits (61), Expect = 0.57
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 162 KMVYETVPRTVRILLLGEPGVGKTSLILSLVTEE 263
K E V + ++LLGE G GKT+ I + EE
Sbjct: 517 KQFLEAVSKNQILVLLGETGSGKTTQITQYLAEE 550
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 0.75
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 174 ETVPRTVRILLLGEPGVGKTSLILSLV 254
+ P V + ++G PG GK++LI SLV
Sbjct: 69 DEAPPPVIVAVMGPPGTGKSTLIKSLV 95
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 28.3 bits (60), Expect = 0.75
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTEEF 266
+L G PG GKTS IL+L E F
Sbjct: 55 MLFYGSPGTGKTSTILALSRELF 77
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 253 TNDKISDVLPTPGSPRRSIRTVRGTV 176
TND+ D L TP S RR R+ R ++
Sbjct: 2413 TNDQEEDALATPSSSRRDSRSKRASL 2438
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 201 LLLGEPGVGKTSLILSLV 254
L+LG PG GKT+ I SL+
Sbjct: 952 LILGMPGTGKTTTISSLI 969
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEIT 302
+LL G PG GKT L ++ TE + A +T
Sbjct: 495 MLLFGPPGTGKTMLARAVATESRSVFFSISASSLT 529
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 177 TVPRTVRILLLGEPGVGKTSLILSLVTE 260
T+PR L++G G GK++L ++L+ E
Sbjct: 603 TIPRNQFTLVVGSTGSGKSTLAMALLGE 630
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 26.6 bits (56), Expect = 2.3
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +3
Query: 195 RILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPEQ 368
+ +L+G+ GVGK++L++ EF E T + +++ I D E+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 369 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDN 491
+ A IV+ + +Q + + + WL +R++
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGR-WLKELREH 111
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 375 EQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDY 506
++ AE ++ +C IV+S ETL KI W+ + N ED+
Sbjct: 132 KRFAECFDKNPDLCLIVYSKLEVETLAKITPIWINVAKKNKKEDF 176
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTE 260
+LL G PG GKT L ++ TE
Sbjct: 415 MLLFGPPGTGKTMLARAVATE 435
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 201 LLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 371
L+ G PG GKT IL ++ T + + +P + N I IC P +
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTS--SSQGLQFNVPGQT--RKTSKNKILICAPSNA 1342
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 171 YET--VPRTVRILLLGEPGVGKTSLILSLVTE 260
Y+T +P LL G PG GKTS + +L E
Sbjct: 234 YDTRGIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 323 WRYISRYSYFFSFWRHMFCK 264
WR I ++ F+ RH FCK
Sbjct: 6 WRSILYIAFLFAITRHAFCK 25
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 186 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 281
R +RIL++G GKT+++ L E +P
Sbjct: 16 REMRILMVGLDAAGKTTILYKLKLGEIVTTIP 47
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 180 VPRTVRILLLGEPGVGKTSL 239
+P+ ILL G PG GKT L
Sbjct: 176 IPQPKGILLYGPPGTGKTLL 195
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 186 RTVRILLLGEPGVGKTSLILS 248
R +L G PG GKTS IL+
Sbjct: 55 RVPHMLFYGPPGTGKTSTILA 75
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 5.3
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -2
Query: 409 TCALSISSATCSKDCSGIQISIILVGTCSGVTSAGIVISSAFGGTCSVNSSVTNDKISDV 230
TC +S SS + S S I+ ++GT TS+ I+S+ S +SS ++ S
Sbjct: 113 TCTISTSSLSYSGTISSTSIAPSMIGT---RTSSSYFITSSSSTPSSSSSSSSSSPSSSS 169
Query: 229 LPTPGSPRRS 200
+ S + S
Sbjct: 170 SKSSSSSKSS 179
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Frame = +3
Query: 159 YKMVYETVPRTVRILLLGEPGVGK-TSLILSLVTEEFTE---------HVPPKAEEITIP 308
YK+ + P +R++ + P + T ++ + T + E HVPP AEE I
Sbjct: 78 YKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGIN 137
Query: 309 ADV 317
++
Sbjct: 138 CEI 140
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTE 260
ILL G PG GK+ L ++ TE
Sbjct: 165 ILLYGPPGTGKSYLAKAVATE 185
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEI 299
+L G PG GKT L ++ E + K E+
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSANFISVKGPEL 567
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 186 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDI 353
+ +RIL+LG GKT+++ L + +P + VT + + N+ D+
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNV---ETVTYKNIKFNVWDV 72
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 159 YKMVYETVPRTVRILLLGEPGVGKTSLI 242
Y+ + PR V LL G PG GKT L+
Sbjct: 160 YRQIGIDPPRGV--LLYGPPGTGKTMLV 185
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -1
Query: 434 IH*KYYAYYMCPFYLFSNLFQRLFRNTNINNIGWNLFWRYISRYSYFFSFWRHMFC 267
IH Y P + Q + + + GW ++S +S F SF H FC
Sbjct: 161 IHHTYEFLLAYPNAYIAAALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVHAFC 216
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = +3
Query: 204 LLGEPGVGKTSL---ILSLVTEEF 266
L+G PGVGKTS+ I S + EF
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREF 599
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 198 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEI 299
+LL G PG GKT L ++ E + + E+
Sbjct: 529 VLLWGPPGCGKTLLAKAVANESKANFISIRGPEL 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,614
Number of Sequences: 5004
Number of extensions: 37820
Number of successful extensions: 222
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -