Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23a13
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0298 - 22117451-22118698                                         33   0.17 
03_06_0190 + 32219878-32220465,32220551-32220652,32220730-322207...    30   1.6  
02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474...    30   1.6  
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369...    29   2.8  
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998...    29   3.7  
08_02_0833 - 21623721-21623821,21624076-21624667                       28   6.5  
05_03_0039 - 7621613-7622695                                           27   8.7  

>09_06_0298 - 22117451-22118698
          Length = 415

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 445 SASSGVWLLLREKRAGPALKTETERAAGHSTLEFLGW 335
           S +  +W+  REK++G  +K E  R  G S L FLGW
Sbjct: 293 SGAVSLWVYSREKKSGRWVKREGRRLLGSSVL-FLGW 328


>03_06_0190 +
           32219878-32220465,32220551-32220652,32220730-32220795,
           32220977-32221042,32221135-32221422,32222178-32222276,
           32222821-32222914,32223923-32223975
          Length = 451

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 378 PSALPVIRHL--NSWDGSQQAKPCRARHHVRPGASRECPCARTLPPVRSARLCTHNDSVT 205
           P+A P +R    +SW G   +  C + H     A R       LPP R  R  TH+ + T
Sbjct: 101 PAARPPMRSGIGSSWTGDICSAFCGSNHIPETAAQRCRDAGAALPPERPRRSSTHDGAGT 160

Query: 204 QISNMS 187
             S  S
Sbjct: 161 SSSGGS 166


>02_05_0933 +
           32846658-32846729,32847038-32847133,32847243-32847411,
           32847608-32847669,32848364-32849320,32850036-32850119,
           32850307-32850595,32850645-32850694
          Length = 592

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 234 RLCTHNDSVTQISNMSCTETE--DHENSRDSADAPAERIVRSTET 106
           RLCT NDS+   SN S    +  D  N+   A+  A++   STET
Sbjct: 136 RLCTLNDSIVLPSNCSAVHDQQLDKLNTEQGANIIAQQDNASTET 180


>11_04_0359 +
           16735204-16735676,16736597-16736647,16736860-16736934,
           16737011-16737062,16737147-16737280,16737397-16737511,
           16737665-16737751,16737855-16737903,16738351-16738435,
           16738641-16738715,16738848-16739029,16739905-16739969
          Length = 480

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 230 FAPITTPLRKSRICHALKLKITRTRAIRPTHR 135
           F+PIT P   +R C +  L ++R    RPT R
Sbjct: 123 FSPITVPAAATRHCRSAALLLSRLPTGRPTFR 154


>07_03_0965 -
           22996575-22999112,22999202-22999636,22999717-22999801,
           22999888-22999957,23000050-23000293,23000396-23000482,
           23000655-23000706,23000830-23001226,23001324-23001648,
           23001748-23001914,23002007-23002547
          Length = 1646

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 303 HH---VRPGASRECPCARTLPPVRSARLCTH 220
           HH   V+PG+S     A  LPPVR  R  TH
Sbjct: 642 HHPMDVKPGSSAGLQHAALLPPVRPKRCATH 672


>08_02_0833 - 21623721-21623821,21624076-21624667
          Length = 230

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 478 CRGSQLQKPHSSASSGV-WLLLREKRAGPALKTETERAAG 362
           CR    + P S    GV W + RE+R+G +   + ER AG
Sbjct: 94  CRRESRRWPSSWRGEGVRWRMRRERRSGVSWGRKREREAG 133


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 544 KHGPEPATPPVRHQFPHL 491
           K GP+P  PP +H+ PH+
Sbjct: 337 KPGPKPIAPPNKHKPPHM 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,161
Number of Sequences: 37544
Number of extensions: 313024
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)