Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23a13
(604 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY672590-1|AAT75005.1| 347|Homo sapiens retinitis pigmentosa 1 ... 32 1.8
AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1 ... 32 1.8
AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1 ... 32 1.8
AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP... 32 1.8
AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protei... 32 1.8
D87435-1|BAA13379.2| 1880|Homo sapiens KIAA0248 protein. 29 9.5
BC117682-1|AAI17683.1| 1855|Homo sapiens GBF1 protein protein. 29 9.5
BC117681-1|AAI17682.1| 1855|Homo sapiens GBF1 protein protein. 29 9.5
BC014171-1|AAH14171.2| 548|Homo sapiens GBF1 protein protein. 29 9.5
AL356420-1|CAH72761.1| 1859|Homo sapiens golgi-specific brefeldi... 29 9.5
AL160011-3|CAH71625.1| 1859|Homo sapiens golgi-specific brefeldi... 29 9.5
AL121928-2|CAI12515.1| 1859|Homo sapiens golgi-specific brefeldi... 29 9.5
AF068755-1|AAD15903.1| 1859|Homo sapiens sec7 domain family memb... 29 9.5
>AY672590-1|AAT75005.1| 347|Homo sapiens retinitis pigmentosa 1
protein.
Length = 347
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 258 TLPPVRSARLCTHNDSVTQISNMSCTETEDHENS 157
TL P++SA +C + SV SN S + + H NS
Sbjct: 251 TLKPIKSAPVCRNETSVVNCSNNSFSGNDPHTNS 284
>AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1
protein protein.
Length = 2156
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 258 TLPPVRSARLCTHNDSVTQISNMSCTETEDHENS 157
TL P++SA +C + SV SN S + + H NS
Sbjct: 928 TLKPIKSAPVCRNETSVVNCSNNSFSGNDPHTNS 961
>AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1
protein protein.
Length = 2156
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 258 TLPPVRSARLCTHNDSVTQISNMSCTETEDHENS 157
TL P++SA +C + SV SN S + + H NS
Sbjct: 928 TLKPIKSAPVCRNETSVVNCSNNSFSGNDPHTNS 961
>AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP1
protein protein.
Length = 2156
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 258 TLPPVRSARLCTHNDSVTQISNMSCTETEDHENS 157
TL P++SA +C + SV SN S + + H NS
Sbjct: 928 TLKPIKSAPVCRNETSVVNCSNNSFSGNDPHTNS 961
>AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protein 1
protein.
Length = 2156
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 258 TLPPVRSARLCTHNDSVTQISNMSCTETEDHENS 157
TL P++SA +C + SV SN S + + H NS
Sbjct: 928 TLKPIKSAPVCRNETSVVNCSNNSFSGNDPHTNS 961
>D87435-1|BAA13379.2| 1880|Homo sapiens KIAA0248 protein.
Length = 1880
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 1535 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 1572
>BC117682-1|AAI17683.1| 1855|Homo sapiens GBF1 protein protein.
Length = 1855
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 1510 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 1547
>BC117681-1|AAI17682.1| 1855|Homo sapiens GBF1 protein protein.
Length = 1855
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 1510 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 1547
>BC014171-1|AAH14171.2| 548|Homo sapiens GBF1 protein protein.
Length = 548
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 203 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 240
>AL356420-1|CAH72761.1| 1859|Homo sapiens golgi-specific brefeldin A
resistance factor 1 protein.
Length = 1859
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 1514 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 1551
>AL160011-3|CAH71625.1| 1859|Homo sapiens golgi-specific brefeldin A
resistance factor 1 protein.
Length = 1859
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 1514 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 1551
>AL121928-2|CAI12515.1| 1859|Homo sapiens golgi-specific brefeldin A
resistance factor 1 protein.
Length = 1859
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 1514 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 1551
>AF068755-1|AAD15903.1| 1859|Homo sapiens sec7 domain family member
protein.
Length = 1859
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 SLWVQ-RRALRTGGRVLAQGHSRLAPGRTWCRARQGLAC 328
S W + +R L TGG+ + + SR WC QG+AC
Sbjct: 1514 SSWAEEQRHLETGGQKI-EADSRTLWAHCWCPLLQGIAC 1551
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,802,206
Number of Sequences: 237096
Number of extensions: 1561515
Number of successful extensions: 8086
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8086
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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