Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23a12
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   1.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   1.8  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   2.4  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   2.4  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   4.3  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    24   7.5  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.5  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    23   9.8  

>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 146 KQHRRTLRLKTGMRWRFPNVSCPHEPFLIALGTFLVGNR 30
           K H     ++T +R+     S P  P  + LGT+ V NR
Sbjct: 235 KSHNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNR 273


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 69   WFVWARNIWKSPP 107
            W VWA  +W +PP
Sbjct: 1129 WEVWAPRVWSNPP 1141


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 162 YRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSS 55
           Y+SV  AAPP PP++ R     +  + P +  F +S
Sbjct: 116 YQSVPSAAPP-PPSQQRYMPDSAVAYNPNQDQFGNS 150


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 191 LRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHEPFLIALGTFL 42
           + ++L     + +L  +  R    K  +RWR+ +V C     +I    FL
Sbjct: 63  VHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFL 112


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 186 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYF 46
           TN+   +K  S TK+ P NP +E+ +   I + F  +  I  S + F
Sbjct: 60  TNSDNKIKKLSKTKSNPTNPKSEE-DPSQICQSFDESNIITPSKYLF 105


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 198 GIFATNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 79
           GIF +N  + ++  S  KA PP PP +     A S    P
Sbjct: 187 GIFPSNYVRLLE-DSAVKAQPPPPPPQQNYPPAASSSAPP 225


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 138 PPNPPAEDRNAVAIS 94
           PPNPPA + NA  ++
Sbjct: 277 PPNPPAANGNATPVT 291


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 173 WKVFVANIPYYNGKFKGLK 229
           W V +A+ P  N  F+G K
Sbjct: 179 WNVIIASSPLNNSDFEGFK 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,858
Number of Sequences: 5004
Number of extensions: 23980
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)