Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23a12
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895...    31   0.31 
01_07_0114 + 41161923-41163251                                         27   3.9  
07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880     27   5.1  
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112...    27   5.1  
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123...    27   5.1  
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71...    26   8.9  
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    26   8.9  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    26   8.9  

>09_04_0746 -
           19888479-19888622,19888739-19888867,19889061-19889548,
           19889666-19889843,19889920-19889991,19890993-19891193
          Length = 403

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 186 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 79
           TN FQS  + S T   PP PP  D + + +SK  LP
Sbjct: 41  TNPFQSAAFSSTTTGDPP-PPTMD-SPIKVSKIILP 74


>01_07_0114 + 41161923-41163251
          Length = 442

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 99  SPPHSCLQPEGSAVLLL*RSYISRTGKYSSQIYPITTESLRDS 227
           +PP  CL P     L+L  S +  TG+  +   P+    +RDS
Sbjct: 3   NPPIKCLLPPAIVSLVLLISCMVATGEQQAPYKPLVVPLVRDS 45


>07_03_1429 + 26501055-26501639,26502252-26502385,26502499-26502880
          Length = 366

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 147 KAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFS 40
           +A PP+P  E+  AV     +L  +    ++W+ FS
Sbjct: 100 RALPPSPAMEEETAVRAQGVYLYDKKEAPNAWFAFS 135


>05_06_0212 +
           26410330-26410419,26410562-26410846,26411005-26411208,
           26411636-26411692,26411859-26412926
          Length = 567

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 198 PITTESLRDSKRRSEY 245
           P++TESL+ SKRRS +
Sbjct: 455 PLSTESLKSSKRRSSF 470


>05_01_0177 +
           1231679-1231753,1232259-1232546,1232608-1232685,
           1233458-1233673,1233862-1233981,1234079-1234804
          Length = 500

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 174 QSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYFFSW*PYEINCL 13
           ++V   + T + PP    E++  + I   F       NSSW F S   +  +C+
Sbjct: 88  EAVPVPAQTSSLPPGVSREEQATIKIQTAFRGYLLSENSSWLFISSAAFIYHCV 141


>12_01_0089 -
           707260-707317,707626-708050,708663-709621,710223-710408,
           710502-710604,710701-710883,710932-711012,711072-711164,
           711650-711832,713751-713966
          Length = 828

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 156 SVTKAAPPNPPAEDRNAVAIS 94
           +V     PNPP+EDR A  I+
Sbjct: 39  AVVARIQPNPPSEDRRAAVIA 59


>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 170 DWKVFVANIPYYNGKFKGL 226
           DW V    +PY  GK KGL
Sbjct: 668 DWGVQQDTVPYIQGKIKGL 686


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 198 GIFATNTFQSVKYRSVTKAAPPNPPAEDRNAVAIS 94
           G+  T T Q ++  + + A  P PP+E   A A S
Sbjct: 890 GVSVTRTGQGMRRSASSPALAPPPPSESGTAAATS 924


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,492
Number of Sequences: 37544
Number of extensions: 147018
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)