Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22p14
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   3.7  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    24   6.4  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    24   6.4  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = -2

Query: 261 CXLIRP-RGS-CHCCDRSVNY 205
           C L RP R S CH CD  V Y
Sbjct: 187 CHLYRPPRASHCHLCDNCVEY 207


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 204 CNSRTCHNNGRNLVDVLTYNVXMMCDVTRFWRGRTAA 314
           CN+   +N+  +  D L YN+   C  + F+    AA
Sbjct: 211 CNATKLNNDTNSETDFLGYNMYEWCGHSDFYTSGYAA 247


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 189 HGXKYCNSRTCHNNGRNLVD 248
           H  ++ NSRT + NG N  D
Sbjct: 67  HDNQFFNSRTYYGNGGNTTD 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,686
Number of Sequences: 5004
Number of extensions: 10031
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)