Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22p03
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.86 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.86 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 279 TESWDGPHHRISKHRNISES 338
           + SW+G   ++SKH  +S +
Sbjct: 704 SHSWEGDSFKVSKHEEVSRT 723


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +1

Query: 268 PSSGLSPGMG----RITGSASIETLVRVGIEKE-HGLSPDSKMVVLHDFTPCVDDELEVK 432
           PSSGL PG G    +   S   E+     + K   GL+  S+   ++  TP  +  L+V 
Sbjct: 210 PSSGLQPGEGLPMWKSDTSDGPESHQNSNVPKSVAGLNVSSRRSDMNGTTPLDEKPLDVS 269

Query: 433 RGQIVNVLY 459
               V+ LY
Sbjct: 270 SNDKVHPLY 278


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +1

Query: 370 DSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRRE 507
           D K   LH       D L  +    V    R  +W+Y+  A S  E
Sbjct: 696 DDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRARSESE 741


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 616 LSVSDGVTNDGHSEL 660
           LSVS G  ND H+E+
Sbjct: 307 LSVSGGALNDCHAEV 321


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 237 FWRL*QRPLQAQFRTESWDGP 299
           FW   Q  L AQ +T S+D P
Sbjct: 112 FWDEDQHRLYAQIKTGSYDYP 132


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 472 WVYVIVAESRREGFIPH 522
           W+  I+ + R EG+I H
Sbjct: 356 WIDAIMTQLREEGWIHH 372


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 335 LTNVSMLADPVMRPIPGLSPELGLERS 255
           L+N + L  PVM     L+ +LGL+ S
Sbjct: 42  LSNYNRLIRPVMNNTETLTVQLGLKLS 68


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 422 NSSSTHGVKSWSTTIFESGLRPCSFSMPTLTNVS 321
           +SS  HG KSW+    ++ L        +LT  S
Sbjct: 401 SSSHHHGSKSWTQEDMDAALEALRNHDMSLTKAS 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,597
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)