Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22o18
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 145 IIPRLRNPGRLWYCAS 192
           +IP  +NP +LWY  S
Sbjct: 585 VIPTDKNPVQLWYVPS 600


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 595 KQPLRFKWGVG 627
           KQ LR +WG G
Sbjct: 141 KQKLRLRWGTG 151


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 36 CYSILPRPLCV 4
          C +++P+PLC+
Sbjct: 54 CPNVVPKPLCI 64


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 36 CYSILPRPLCV 4
          C +++P+PLC+
Sbjct: 54 CPNVVPKPLCI 64


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 262 YNKETLRRAVLRPPGVPLLTISNHHSCFDD 351
           +N E LR   L PP +P +  +   + FD+
Sbjct: 629 FNWEGLRARTLEPPIMPRVQNATDTTNFDE 658


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 175 LWYCASSLTVAVVGLFSK 228
           L YC S++   +  LFSK
Sbjct: 50  LGYCNSAINPCIYALFSK 67


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 175 LWYCASSLTVAVVGLFSK 228
           L YC S++   +  LFSK
Sbjct: 498 LGYCNSAINPCIYALFSK 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,861
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)