Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22o10
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 292 WFDYRRLTPRCEQGRIQLWRQE 357
           WFDY  ++   ++G+I L  +E
Sbjct: 499 WFDYSEVSKWVQKGQICLKEKE 520


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 306 PIIEPSHLNKEGTSKLTR 253
           P+I+P+++NKE +   T+
Sbjct: 770 PVIKPANVNKEQSPNSTK 787


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 194 CMIIIFYCYTEFVSKSMKDYRVNFE 268
           CM+ +F    EFV   + D R   E
Sbjct: 269 CMMFVFAALGEFVVVKVLDLRSQLE 293


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 147 VTYRDYVNTSEESVTISRREWLFGLNDIFTTLHQNRLKF 31
           + Y D V  +  S T S  E +  LN++F    Q   +F
Sbjct: 274 ILYADIVGFTAISSTYSASELVKILNELFARFDQLSERF 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,027
Number of Sequences: 438
Number of extensions: 2501
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)