Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22n07
         (400 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80746-1|AAB91444.1|  358|Homo sapiens CAGH4 protein.                  31   1.4  
U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating...    31   1.4  
BC104758-1|AAI04759.1|  465|Homo sapiens trinucleotide repeat co...    31   1.4  
BC068008-1|AAH68008.1|  407|Homo sapiens TNRC4 protein protein.        31   1.4  
AL589765-5|CAI17168.1|  465|Homo sapiens trinucleotide repeat co...    31   1.4  
AL589765-3|CAI17166.1|  465|Homo sapiens trinucleotide repeat co...    31   1.4  
AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.       31   1.4  
AK131434-1|BAD18580.1|  933|Homo sapiens protein ( Homo sapiens ...    31   1.4  
AB209264-1|BAD92501.1|  441|Homo sapiens trinucleotide repeat co...    31   1.4  
AY165003-1|AAN73884.1|  465|Homo sapiens CUG-BP and ETR-3 like f...    29   4.3  
AF329264-1|AAK07474.1|  462|Homo sapiens CUG-BP and ETR-3 like f...    29   4.3  
AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellu...    29   5.7  

>U80746-1|AAB91444.1|  358|Homo sapiens CAGH4 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  + A  VDP
Sbjct: 157 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDP 210


>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
            factor protein.
          Length = 1404

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 123  TLTQETATNLLTTARTSLILPKITTLMETAT 215
            T TQ+T    +TT +T+ + PK+TT  +T T
Sbjct: 963  TTTQDTTPFKITTLKTTTLAPKVTTTKKTIT 993


>BC104758-1|AAI04759.1|  465|Homo sapiens trinucleotide repeat
           containing 4 protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  + A  VDP
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDP 317


>BC068008-1|AAH68008.1|  407|Homo sapiens TNRC4 protein protein.
          Length = 407

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  + A  VDP
Sbjct: 206 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDP 259


>AL589765-5|CAI17168.1|  465|Homo sapiens trinucleotide repeat
           containing 4 protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  + A  VDP
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDP 317


>AL589765-3|CAI17166.1|  465|Homo sapiens trinucleotide repeat
           containing 4 protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  + A  VDP
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDP 317


>AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.
          Length = 1404

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 123  TLTQETATNLLTTARTSLILPKITTLMETAT 215
            T TQ+T    +TT +T+ + PK+TT  +T T
Sbjct: 963  TTTQDTTPFKITTLKTTTLAPKVTTTKKTIT 993


>AK131434-1|BAD18580.1|  933|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16561 fis, clone SYNOV4003981, moderately
           similar to Homo sapiens proteoglycan 4, (megakaryocyte
           stimulating ).
          Length = 933

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 123 TLTQETATNLLTTARTSLILPKITTLMETAT 215
           T TQ+T    +TT +T+ + PK+TT  +T T
Sbjct: 492 TTTQDTTPFKITTLKTTTLAPKVTTTKKTIT 522


>AB209264-1|BAD92501.1|  441|Homo sapiens trinucleotide repeat
           containing 4 variant protein.
          Length = 441

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  + A  VDP
Sbjct: 240 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDP 293


>AY165003-1|AAN73884.1|  465|Homo sapiens CUG-BP and ETR-3 like
           factor 3 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  +    VDP
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPVAPVDP 317


>AF329264-1|AAK07474.1|  462|Homo sapiens CUG-BP and ETR-3 like
           factor 3 protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +2

Query: 89  ANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDP 250
           A A  PV  +  A   NGY P+  +P     P    PNG    P  +    VDP
Sbjct: 264 AIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPVAPVDP 317


>AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellular
           receptor 1 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 138 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPLSLVLA 272
           T    +TT RTS  +P  TT+  T    + ++  T T+P ++ ++
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVS 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,420,689
Number of Sequences: 237096
Number of extensions: 1274628
Number of successful extensions: 6317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6295
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)