Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22m19
         (266 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    25   0.21 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   1.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   4.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    20   6.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   6.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   6.1  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 24.6 bits (51), Expect = 0.21
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 251 QRHRHVGHXVTAPSSAFGV 195
           +RH+H+   VTA   A+GV
Sbjct: 108 ERHKHIVRLVTAIGDAYGV 126


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 102 SRKFLARYKIPGAHTKRGSYAERNFDFRALVHPESARWR 218
           +RKF A     G+  KR S  ER       V   SAR R
Sbjct: 91  NRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLR 129


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 80  IYLFTHTVFLSLLTLNSLXYHNYF 9
           +Y F+ T+   L  L S+ Y N F
Sbjct: 316 LYYFSTTINPILYNLMSIKYRNAF 339


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 167 KEFRFSRASTPRKR 208
           KEF F+R  T R+R
Sbjct: 25  KEFHFNRYLTRRRR 38


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 161 RGKEFRFSRASTPRKR 208
           R  E  F  AS+P+KR
Sbjct: 13  RSAESEFEGASSPKKR 28


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 140 RSWYLIPR*KLSRALFLVLNIYLF 69
           R  +L  R  +S  +F ++NI+LF
Sbjct: 159 RKGFLRTRWSISGTVFDLINIHLF 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,197
Number of Sequences: 438
Number of extensions: 1228
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)