Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22m03
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...   160   2e-40
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    28   1.5  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   1.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   3.4  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   7.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   7.8  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   7.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.8  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   7.8  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  160 bits (389), Expect = 2e-40
 Identities = 72/131 (54%), Positives = 96/131 (73%)
 Frame = +2

Query: 293 HKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 472
           +K+D  P+T   +T  + L LYE++  +RR+E A   LYK K IRGFCHL  GQEAVA G
Sbjct: 62  YKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAG 120

Query: 473 MRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGG 652
           +  A+   DS+IT+YRCHG+ Y  G+S+  ++ EL GR+ G S+GKGGSMH++ +NFYGG
Sbjct: 121 IEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGG 180

Query: 653 NGIVGAQVPLG 685
           NGIVGAQ+PLG
Sbjct: 181 NGIVGAQIPLG 191


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 622 HGTSLAPGATGPAPRQLRE--HPQHTNAHEISPS 527
           H  S AP ++ P    L    HP HTNA +++ S
Sbjct: 83  HSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGS 116


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 429 PRMIFSLYRFPDAVSILRNIV 367
           PR++F +   PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = -3

Query: 621 MEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYAVITESASRIAALIPTATASCPEY 442
           +E P+   +PV  P  +E TP TL+P+      +    + E +   A       AS   Y
Sbjct: 41  LEDPVNPIRPVYTPTRTEITPVTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRY 100

Query: 441 R*QKPRMIFSLYRFPDAVSILRNIVSCSYSLRASSEVS 328
             +  ++  S+       S+LR   S S  LR +SE S
Sbjct: 101 LEKHGKLEGSMKESSINGSLLRR-SSVSTILRPASESS 137


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = -3

Query: 606 PREQPVLRPVSSESTPSTL-TPMR*VHP*QR----YAVITESASRIAALIPTATASCPEY 442
           PR++P L P+S  + PST+ T  R     Q+    YA I E  S +      A++S P+ 
Sbjct: 312 PRDRPPLIPISRIAVPSTIETEERQYRGNQKIINFYAKIFEPNSGLGTSSEGASSSFPDV 371

Query: 441 R*QKPRMIFSLYRFPD 394
                +     Y  PD
Sbjct: 372 DPNLAQNGVPYYSLPD 387


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 263 ATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQ 364
           A F+IKP  L    Q P  +  L  E ++ LY++
Sbjct: 343 AAFDIKPSTLDTQTQLPENTYVLKEETSMVLYDE 376


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 290 LHKLDQGPATSATLTSEDALKLYEQ---LT-ILRRIETASGNLYKEKI 421
           LH L + P  ++TLT+E AL+  E    LT      E + G  Y++ I
Sbjct: 204 LHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNI 251


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 431 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 336
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 431 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 336
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 263 ATFEIKPYKLHKLDQGPATSATLTSEDA 346
           A F++ P+K+  LD   + S  LT +DA
Sbjct: 41  APFDVPPFKVESLDVLISQSEQLTKQDA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,177
Number of Sequences: 5004
Number of extensions: 54825
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)