Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22l02
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 29 0.48
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.48
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.64
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 29 0.84
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 28 1.5
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 27 3.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 3.4
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 3.4
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 5.9
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 7.8
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.48
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Frame = +3
Query: 57 NNL--LANLKLFKVLIGIFMNMEK-RIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYT 227
NN+ + N+ K L +F + R I G D EL + R ++ D
Sbjct: 114 NNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIR---VIENLDTLV 170
Query: 228 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRIS--NGLTFLSGCKKLAHLNLSG-NKI 398
NL+ L + +T + F L L L + NRI+ L LS C + +++ +G
Sbjct: 171 NLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSF 230
Query: 399 KDLETLKPLE 428
+E L+ LE
Sbjct: 231 SGIEVLENLE 240
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 177 LDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNG 338
LD CR+ + ++ Y +LQIL+ VG + T P +D I++G
Sbjct: 518 LDPCRAMDPKVVSTSYVSLQILNKPYVGFRNINANYTFPTTSYSRRNDEEITSG 571
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 228 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLS-GCKKLAHLNLSGNKIKD 404
+++ L L+N TL +R LEL++ ++ +++ L L+LS N I D
Sbjct: 846 DIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISD 905
Query: 405 LETLKPLE 428
+E+LKPL+
Sbjct: 906 IESLKPLQ 913
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 886
Score = 28.7 bits (61), Expect = 0.84
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = -2
Query: 391 FPERFKCASFLQPLRKVSPFDILLSDSSNFLSIGRVGKPLSVVRPTLLRLSICKFVYSSV 212
F FK S L P + LS S++++ V P S+++ TL + KF S
Sbjct: 723 FGSLFKNVSGL-PAETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFKF--SPS 779
Query: 211 KPTMFVLLQLSRFSSF---TCEGSLPLRSKMILF-SMFINIPINTL 86
+P + ++ + + G LP++SKM+L+ S I+ P++++
Sbjct: 780 QPLSSLGKNKEKYDALLERSSHGVLPVQSKMLLYNSNHISCPLSSI 825
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 196 VLLQLSRFSSFTCEGSLPLRSKMILFSMFINIPINTLNNF 77
+LLQ ++++ C G+ L S + + + IP TL +F
Sbjct: 113 ILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 262 RPTLLRLSICKFVYSSVKPTMFVLL 188
RP + RL KF YSS++ T+F L+
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALV 131
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 259 VSQHSKVFRPCLCSENWNCQTIEYQMD 339
+ QH L + NW+CQ I+ MD
Sbjct: 458 LQQHKNTIENQLAAANWDCQKIDEFMD 484
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 274 LSVVRPTLLRLSICKFVYSSVKPTMFVL 191
+S V P KFV SS+KPT+ VL
Sbjct: 642 ISAVPPAEYASRFYKFVESSIKPTLLVL 669
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.8 bits (54), Expect = 5.9
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 192 STNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLA 371
S N +G TD Y +L L K F R+ LSD++ + + L KKL+
Sbjct: 811 SENDIGGTDIYP----FALQGAALAAAKDFSR----REASLSDSQSAASMDMLPMKKKLS 862
Query: 372 HLNLSGNK-IKDLET 413
H + S + IK L T
Sbjct: 863 HSSASSTRSIKSLLT 877
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 279 FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLET 413
F +L L L+LS N ++ L +L LNL+ NKI T
Sbjct: 352 FLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 283 GKPLSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSR-FSSFTCEGSLPLRSKMILFSMF 110
G + V LL L C F++ ++KP +++L +R E + + M+L S F
Sbjct: 218 GSGVRAVYILLLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSESFICIVLSMVLVSAF 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,055
Number of Sequences: 5004
Number of extensions: 43406
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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