Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22k12
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated, ...   116   6e-26
AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated ...   116   6e-26
BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated, ...    92   2e-18
AK074611-1|BAC11088.1|  669|Homo sapiens protein ( Homo sapiens ...    30   9.3  

>BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 379

 Score =  116 bits (280), Expect = 6e-26
 Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
 Frame = +2

Query: 269 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 448
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 449 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 622
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 623 YFCSNPSGGAVCLPMVLSTFSHYSPLHL 706
           YF SNP+   +C PM+LSTFSH+S  H+
Sbjct: 195 YFTSNPASKVLCSPMLLSTFSHFSLFHM 222


>AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated
           rhomboid-like protein protein.
          Length = 379

 Score =  116 bits (280), Expect = 6e-26
 Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
 Frame = +2

Query: 269 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 448
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 449 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 622
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 623 YFCSNPSGGAVCLPMVLSTFSHYSPLHL 706
           YF SNP+   +C PM+LSTFSH+S  H+
Sbjct: 195 YFTSNPASKVLCSPMLLSTFSHFSLFHM 222


>BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 329

 Score = 92.3 bits (219), Expect = 2e-18
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
 Frame = +2

Query: 269 RQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR 448
           R AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S    
Sbjct: 76  RSALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDG 134

Query: 449 -PGTWLTAQQKKSKSE-PGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVK 622
               WL + + + + +    + KWWN+L D ++    I+AAN+LVF  WR+ +LQ  M++
Sbjct: 135 IKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIR 194

Query: 623 YFCSNPSGGAV 655
           YF SNP+   +
Sbjct: 195 YFTSNPASSVI 205


>AK074611-1|BAC11088.1|  669|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90130 fis, clone HEMBB1000407. ).
          Length = 669

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = -2

Query: 651 APPEGLEQKYL---TIKGCRALMRHAPNTSKLAAKI-----G*NTFSLSRSEFHHFFNGP 496
           AP    E K L   TI  CR+L+++ P T  L A I           LS    +H F   
Sbjct: 43  APTSSSELKLLEEATISVCRSLVKNNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQ 102

Query: 495 GSDLLFFCCAVSHVPGLRSSEEA*TRRFSY 406
             + LF  C +  V   + SEE     F+Y
Sbjct: 103 THNALFIICCLLKVFICQMSEEELQLHFTY 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,909,722
Number of Sequences: 237096
Number of extensions: 2253838
Number of successful extensions: 3960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3957
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)