Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22j10
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 526 YIYSFNYMMYW 494
           + Y++NY MYW
Sbjct: 257 FTYTYNYSMYW 267


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 571 CFFLFSLPTYNCSILYIYSFNYMMYW 494
           C    + PTY   I Y      MMYW
Sbjct: 189 CVTFNAFPTYTHEITYSLFGMIMMYW 214


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 352 PISAIRHTDYSLDNRGNFINSEVF 281
           P+ A    DY L+  GNF    VF
Sbjct: 169 PVVAEETVDYMLEKSGNFSRLVVF 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,007
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)