Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22j08
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   0.81 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   0.81 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.81 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   0.81 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 299 IFSNILEFICVHFI 258
           I++++LEF+CV+++
Sbjct: 374 IYASLLEFVCVNYV 387


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 299 IFSNILEFICVHFI 258
           I++++LEF+CV+++
Sbjct: 343 IYASLLEFVCVNYV 356


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 299 IFSNILEFICVHFI 258
           I++++LEF+CV+++
Sbjct: 394 IYASLLEFVCVNYV 407


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 299 IFSNILEFICVHFI 258
           I++++LEF+CV+++
Sbjct: 343 IYASLLEFVCVNYV 356


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 132 TQEEVI*KNVKPETLLQSKKKRESNRKQDK 221
           TQ+ V  K    +  L+SKK  ES RK D+
Sbjct: 357 TQQSVELKLALDQEQLKSKKLEESMRKLDE 386


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 323 NLGESYLHIFSNILEFICVH 264
           N  +SY HI +   EFI +H
Sbjct: 102 NEKQSYFHIATTSNEFIRIH 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 323 NLGESYLHIFSNILEFICVH 264
           N  +SY HI +   EFI +H
Sbjct: 102 NEKQSYFHIATTSNEFIRIH 121


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 323 NLGESYLHIFSNILEFICVH 264
           N  +SY HI +   EFI +H
Sbjct: 41  NEKQSYFHIATTSNEFIRIH 60


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 204 NRKQDKIEIY*KISQNESNKMYAN 275
           N++QD I++  KISQ   N+   N
Sbjct: 31  NKQQDVIQLLQKISQPIPNQELQN 54


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 159  VKPETLLQSKKKRESNRKQD 218
            V PETLL   +K +   K D
Sbjct: 1249 VSPETLLSYDEKMDQKPKMD 1268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,836
Number of Sequences: 438
Number of extensions: 1237
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)