Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22h08
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +1

Query: 142 FCLQGWDVQDDNSPYGQAGFYSNTSMDTISP 234
           FCL G    DD  P       S++S    SP
Sbjct: 429 FCLDGKLPHDDQPPLSPQSDSSSSSRSAESP 459



 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 356  RPQRPLTXPG 385
            +PQ+P T PG
Sbjct: 1127 KPQKPFTSPG 1136


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 175 YRPVHPTLVGRMMCAVC 125
           Y P HP    + +C++C
Sbjct: 97  YPPNHPLSGSKHLCSIC 113


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 175 YRPVHPTLVGRMMCAVC 125
           Y P HP    + +C++C
Sbjct: 97  YPPNHPLSGSKHLCSIC 113


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 249 EPIESRRDRVHGGVTIKACLAV 184
           +PI  R+D+ H     K  LAV
Sbjct: 63  QPISKRKDKEHKKKKSKTILAV 84


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 249 EPIESRRDRVHGGVTIKACLAV 184
           +PI  R+D+ H     K  LAV
Sbjct: 63  QPISKRKDKEHKKKKSKTILAV 84


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 317 WISAACLSL 343
           W+ AAC+SL
Sbjct: 166 WLGAACISL 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,205
Number of Sequences: 438
Number of extensions: 2204
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)