Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22g16
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 118  TSGSIRIQSSGSPVVYR 168
            ++G I I+S  SP+VY+
Sbjct: 1206 SAGDISIESKSSPLVYK 1222


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 285 AVLEALADARIKYDDIQQAVCGYVFGDS 368
           AVL      RI+ D + + V GYV G++
Sbjct: 222 AVLYIRIGLRIQSDSLAENVEGYVHGET 249


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 514 TASATSHMPPSISCFDKNNAFE 449
           TAS+ + +P +  C ++NN  +
Sbjct: 360 TASSAATLPITFRCLEENNKID 381


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = +1

Query: 541 LWEVVISMTEPTQWTGTHLKW 603
           LWE ++ + +  ++   ++KW
Sbjct: 460 LWEFLLKLLQDREYCPRYIKW 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,861
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)