Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f19
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61...    31   0.93 
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57...    31   0.93 
03_05_1031 + 29857759-29857905,29858118-29858124,29858568-29858725     30   1.6  
10_08_0226 - 16001958-16002527                                         27   8.7  
05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162...    27   8.7  
05_01_0225 - 1668176-1668190,1668557-1668570,1669139-1669277,166...    27   8.7  
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759           27   8.7  
03_01_0077 - 630807-631094                                             27   8.7  

>12_01_0073 +
           613316-613447,613611-613802,614067-614232,614460-614845
          Length = 291

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 418 NDLLSECKRNTSLRTSCKRLCPYELNKGLLSPTDAS 311
           N + SE   +TSL TS K  CP       +SP DAS
Sbjct: 178 NRIYSETNIDTSLATSLKSNCPNTTGDNNISPLDAS 213


>11_01_0072 +
           570345-570476,570640-570831,571095-571260,571487-571872
          Length = 291

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 418 NDLLSECKRNTSLRTSCKRLCPYELNKGLLSPTDAS 311
           N + SE   +TSL TS K  CP       +SP DAS
Sbjct: 178 NRIYSETNIDTSLATSLKSNCPNTTGDNNISPLDAS 213


>03_05_1031 + 29857759-29857905,29858118-29858124,29858568-29858725
          Length = 103

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 491 DIRLHSCRFQGFVLVAVAMATCDLERPSLRVQA 393
           ++ + +C + G + V  +  TCDLE P + + A
Sbjct: 57  ELEMQTCHYTGQITVQDSRKTCDLEMPRINITA 89


>10_08_0226 - 16001958-16002527
          Length = 189

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 496 GGGAGLMSCVREGSLEPPYRPPHADTHNHGEG 591
           G G+G  S   +G   P   PP+A+ +  G+G
Sbjct: 132 GTGSGTGSAAADGGASPTSSPPYANANATGDG 163


>05_05_0133 +
           22614219-22614651,22614767-22615671,22615918-22616224,
           22616307-22616380
          Length = 572

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 118 LIKKKNVNSVNQKCTFVDC 174
           L ++  ++S+N +CTFVDC
Sbjct: 403 LTEENPISSLNNECTFVDC 421


>05_01_0225 -
           1668176-1668190,1668557-1668570,1669139-1669277,
           1669398-1669520,1669710-1669940
          Length = 173

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 493 GGGGAGLMSCVREGSLEPPYRPPHADT 573
           GGG A   S V  G   PP+ PP A T
Sbjct: 19  GGGAASEASGVAGGGSSPPHPPPPATT 45


>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
          Length = 417

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 391 FACTRREGRSRSHVAMATATKTNP*NRQE*RRMSGGGGAG 510
           +       R+++    A   +T+   RQ  RR SGGGG G
Sbjct: 303 YMANTESSRAKARSQSAPRQRTDALERQPSRRKSGGGGGG 342


>03_01_0077 - 630807-631094
          Length = 95

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 507 GSYVVCARGLAGAAIPTAAC 566
           G   VC   +AG A PTAAC
Sbjct: 32  GQLTVCTGAIAGGARPTAAC 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,580
Number of Sequences: 37544
Number of extensions: 339822
Number of successful extensions: 1201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)