Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22f11
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 41 2e-04
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 32 0.068
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.63
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 3.4
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 7.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.8
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 7.8
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 7.8
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +1
Query: 235 LAKLRKKTGYTIANCKKALEMHN-NDADKAETWLHEQAQAMGWAKATKLAGRTALQGLV- 408
+ KLR +T ++ K+++E + + A L ++ G A K RTA +G +
Sbjct: 37 IKKLRSETNASMDLVKQSVEEAGVGNLELAREILKKKIVQRGGKLAEKSKNRTAKEGWII 96
Query: 409 -AVKFDKNHGALVELNCETDFVAKNDKFQKM 498
+ D + E+NCE+DFVA+ FQ +
Sbjct: 97 QCISEDGRKAVMAEINCESDFVAQTTPFQDL 127
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 32.3 bits (70), Expect = 0.068
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 464 SVSQLSSTRAPW-FLSNLTATNPWRAVLPANLVAFAHPIAWACSWSHV-SALSASLLCIS 291
S +L+ST W F++N+ + PW LP+ + H + S + + L LLCIS
Sbjct: 3948 SYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCIS 4007
Query: 290 NAFL 279
+ +
Sbjct: 4008 RSIV 4011
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.63
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Frame = -2
Query: 689 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 510
S+ S+ S + I S++ S F S + PS S+SSSI + S + + I+
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSS-PS-SISSSISSSSTILSSPTPSTSSLMIS 638
Query: 509 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATNPWRAVLPANLVAFAHPIAWA---- 342
+SSII + S L++ + S+ + S++ ++ ++L+ + P+A +
Sbjct: 639 SSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSP 698
Query: 341 --CSWSHVSALSASLLCISNAFLQL 273
S S VS SASL I+++ L L
Sbjct: 699 IPSSSSLVSTYSASLSNITHSSLSL 723
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.1
Identities = 25/96 (26%), Positives = 47/96 (48%)
Frame = -2
Query: 689 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 510
S+ LST+ P+ S++ S + S+ + S S SSS + + S + + I+
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 509 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATN 402
+SS + S +T S SS+ + F S L++++
Sbjct: 292 SSSSS--SSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 259 GYTIANCKKALEMHNNDADKAETWL 333
G+T+A +K L NN+ ++A W+
Sbjct: 652 GFTVAQARKGLLESNNNIERAVDWI 676
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 199 TSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNND 309
T P Y ES AK+ K+ G+ + L H+N+
Sbjct: 301 TFPFYHLIESEGFAKMAKRLGHGVYGLPYYLVFHHNE 337
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 202 SPAYKAAE-SSLLAKLRKKTGYTIANCKKALEMHNNDADKAETW 330
+PAY+ E ++ K +K+TG N K + D A+ W
Sbjct: 345 NPAYEKWEVREVVGKKKKRTGILAINNKSIVLTFTKTMDAAQVW 388
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 196 HTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMG 357
H + +S L +R +A K +E A KA+TWL +A+G
Sbjct: 741 HKDECFPNTDSDLTVLVRYDDNALLAAYSKVVER----AHKADTWLENYKEALG 790
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 424 KNHGALVELNCETDFVAKNDKFQKMIEDAA 513
K +G +V++N DF+ K + I+DAA
Sbjct: 258 KTNGGVVQVNFYQDFIRKPGSDRATIDDAA 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,556
Number of Sequences: 5004
Number of extensions: 58459
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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