Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22f11
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L37936-1|AAC37577.1| 294|Homo sapiens elongation factor Ts prot... 141 2e-33
AF110399-1|AAD20224.1| 325|Homo sapiens elongation factor Ts pr... 138 2e-32
BC093068-1|AAH93068.1| 325|Homo sapiens TSFM protein protein. 135 1e-31
BC022862-1|AAH22862.1| 346|Homo sapiens Ts translation elongati... 122 9e-28
Y18880-1|CAB56154.1| 715|Homo sapiens midline 2 protein protein. 31 3.9
BT006663-1|AAP35309.1| 685|Homo sapiens midline 2 protein. 31 3.9
BC017707-1|AAH17707.1| 685|Homo sapiens midline 2 protein. 31 3.9
AY625004-1|AAT48105.1| 685|Homo sapiens TRIM1 beta protein. 31 3.9
AL109946-4|CAO72054.1| 685|Homo sapiens midline 2 protein. 31 3.9
AL109946-3|CAO72053.1| 715|Homo sapiens midline 2 protein. 31 3.9
AL034399-3|CAI42074.1| 685|Homo sapiens midline 2 protein. 31 3.9
AL034399-2|CAI42073.1| 715|Homo sapiens midline 2 protein. 31 3.9
AF196481-1|AAF07341.1| 685|Homo sapiens RING finger protein pro... 31 3.9
>L37936-1|AAC37577.1| 294|Homo sapiens elongation factor Ts
protein.
Length = 294
Score = 141 bits (341), Expect = 2e-33
Identities = 74/170 (43%), Positives = 104/170 (61%), Gaps = 4/170 (2%)
Frame = +1
Query: 190 RIHTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWA 363
R++ P A+ SS LL KLR+KTGY+ NCKKALE D +AE WLH++AQ GW+
Sbjct: 2 RVYAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWS 61
Query: 364 KATKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTK 543
KA KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ + T
Sbjct: 62 KAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTL 121
Query: 544 LQAKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRA 687
+K L+S +L L A ++ L + LAL IG +GEN +L+RA
Sbjct: 122 KDQPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGENMILKRA 171
>AF110399-1|AAD20224.1| 325|Homo sapiens elongation factor Ts
protein.
Length = 325
Score = 138 bits (333), Expect = 2e-32
Identities = 73/168 (43%), Positives = 102/168 (60%), Gaps = 4/168 (2%)
Frame = +1
Query: 196 HTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKA 369
+ P A+ SS LL KLR+KTGY+ NCKKALE D +AE WLH++AQ GW+KA
Sbjct: 35 YAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKA 94
Query: 370 TKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQ 549
KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ + T
Sbjct: 95 AKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKD 154
Query: 550 AKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRA 687
+K L+S +L L A ++ L + LAL IG +GEN +L+RA
Sbjct: 155 QPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGENMILKRA 202
>BC093068-1|AAH93068.1| 325|Homo sapiens TSFM protein protein.
Length = 325
Score = 135 bits (327), Expect = 1e-31
Identities = 72/168 (42%), Positives = 101/168 (60%), Gaps = 4/168 (2%)
Frame = +1
Query: 196 HTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKA 369
+ P A+ SS LL KLR+KTGY+ NCKKALE D +AE WLH++AQ GW+KA
Sbjct: 35 YAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKA 94
Query: 370 TKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQ 549
KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ + T
Sbjct: 95 AKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKD 154
Query: 550 AKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRA 687
+K L+S +L L A ++ L + LAL IG +GE +L+RA
Sbjct: 155 QPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGETMILKRA 202
>BC022862-1|AAH22862.1| 346|Homo sapiens Ts translation elongation
factor, mitochondrial protein.
Length = 346
Score = 122 bits (295), Expect = 9e-28
Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 25/189 (13%)
Frame = +1
Query: 196 HTSPAYKAAESS--LLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKA 369
+ P A+ SS LL KLR+KTGY+ NCKKALE D +AE WLH++AQ GW+KA
Sbjct: 35 YAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKA 94
Query: 370 TKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKF------ 531
KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ +
Sbjct: 95 AKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKD 154
Query: 532 ---AHTKLQAKGPIT----------KME--LDSEQLGTLHAEGGKK--LSEILALFIGSV 660
A++K+Q P+ +E L+S +L L A ++ L + LAL IG +
Sbjct: 155 QPSAYSKVQWLTPVNLALWEAEAGGSLEGFLNSSELSGLPAGPDREGSLKDQLALAIGKL 214
Query: 661 GENAVLRRA 687
GEN +L+RA
Sbjct: 215 GENMILKRA 223
>Y18880-1|CAB56154.1| 715|Homo sapiens midline 2 protein protein.
Length = 715
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>BT006663-1|AAP35309.1| 685|Homo sapiens midline 2 protein.
Length = 685
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>BC017707-1|AAH17707.1| 685|Homo sapiens midline 2 protein.
Length = 685
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>AY625004-1|AAT48105.1| 685|Homo sapiens TRIM1 beta protein.
Length = 685
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>AL109946-4|CAO72054.1| 685|Homo sapiens midline 2 protein.
Length = 685
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>AL109946-3|CAO72053.1| 715|Homo sapiens midline 2 protein.
Length = 715
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>AL034399-3|CAI42074.1| 685|Homo sapiens midline 2 protein.
Length = 685
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>AL034399-2|CAI42073.1| 715|Homo sapiens midline 2 protein.
Length = 715
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
>AF196481-1|AAF07341.1| 685|Homo sapiens RING finger protein
protein.
Length = 685
Score = 31.1 bits (67), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 172 IFQLIRRIHTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQA 351
+ ++I++ A K E+ ++ KLRK +ANC++ LE ++AE L E QA
Sbjct: 269 LVEIIQQRKQMIAVKIKETKVM-KLRK-LAQQVANCRQCLERSTVLINQAEHILKENDQA 326
Query: 352 MGWAKATKLAGRTAL 396
A +A R A+
Sbjct: 327 RFLQSAKNIAERVAM 341
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,380,596
Number of Sequences: 237096
Number of extensions: 2125902
Number of successful extensions: 11264
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11260
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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