Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f10
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    28   0.73 
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    28   0.97 
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    25   5.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 262 SSSGCATTTTCPLYNQNNTRKSNLPRTRYD*TEGFQDR 375
           SS   ATT  C ++NQ N  K N P+T  D   GF +R
Sbjct: 128 SSRKAATTWACKVHNQLN-EKMNQPKTSCD---GFNER 161


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 39  LNYTRSSGSPNKYLLKYYNHSDAVVGSRLLREPIDD 146
           LN   S   P+K  L  + H+DA+  SR L  P  D
Sbjct: 151 LNQRYSDSWPSKITLPKWVHADALFHSRCLESPFKD 186


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 197 ARRCDGHTAILFSDVTSSEHYEVPPAVPRQLR 292
           A + + +T  LFSDV    H   PP  P Q+R
Sbjct: 210 AEKVEDNTLTLFSDVERYSHPPTPP--PEQVR 239


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 257  NVQSSSHLRTISRCDHRIALHRHLQR 180
            +  SSS   +++  D R +LHRHL R
Sbjct: 1315 HADSSSTRTSLAHQDSRKSLHRHLSR 1340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,830
Number of Sequences: 5004
Number of extensions: 26220
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)