Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f10
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0029 - 288676-289287,289441-289733,289842-290031                 29   2.3  
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362...    29   3.0  
08_02_0860 + 21970888-21971833,21973400-21974127                       28   5.2  

>06_01_0029 - 288676-289287,289441-289733,289842-290031
          Length = 364

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 299 SGHVVVVAQPEELRNVQSSSHLRTISRCDHRIALHRHLQR---FT*NHRDLSATVIDW 135
           +GH ++   P +L +  SS H   +S   H+I +H H Q    F   H    AT  DW
Sbjct: 250 AGHHLLNTMPHDLESSTSSFHSLLVSPDHHQINMH-HAQADPFFDDMHAVDQATTTDW 306


>04_01_0272 +
           3624910-3625247,3625286-3625853,3625920-3626895,
           3627053-3627087
          Length = 638

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 205 MRWSHRDIVLRCDEL*TLRSSSGCATTTTCPLYNQNNTRKSNLPR 339
           +++  R  VLRC  + T+RSS      T C  Y ++  R+ +  R
Sbjct: 132 IKYGERTWVLRCGNIDTIRSSLRKEPRTKCYFYLEDEPRQRSFKR 176


>08_02_0860 + 21970888-21971833,21973400-21974127
          Length = 557

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 88  TIITATR*SVADYCVNQSMTVALKSR*FQVNRCKWRCKAMRWSHRDIVLRCD 243
           T+I+  R  V  Y   +S TVA+  + F      +   A    H+ + LRCD
Sbjct: 295 TVISGHRNYVDGYTTFRSATVAVNGKGFMARDVTFENTAGPSKHQAVALRCD 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,758,712
Number of Sequences: 37544
Number of extensions: 192027
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)