Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f09
         (239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom...    24   3.1  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    23   5.4  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    23   5.4  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    23   5.4  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    23   7.1  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    22   9.4  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    22   9.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    22   9.4  

>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 88

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 134 PDRDLKPCIWSRLLFLDDTNCV 199
           PDR+LK  +  R LF+DD   V
Sbjct: 32  PDRELKEELVQRNLFVDDNYLV 53


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 137 DRDLKPCIWSRLLFLDD 187
           D  + P  WSRLL  DD
Sbjct: 197 DMGVYPLTWSRLLLYDD 213


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 74  KINRRKIKTHPFC-TQAQHHKQ 12
           +I  RKI THP C T A+ ++Q
Sbjct: 242 EIVERKIDTHPGCRTVAERYEQ 263


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 545

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 37 QNGCVLIFLRFILHLSITFHT 99
          +NGC+L+F   +L  S+T  T
Sbjct: 3  KNGCLLLFAYSLLSFSLTAAT 23


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 182 LKIANETIYTVLNLGQ 135
           +++A ET+ TVLN+ Q
Sbjct: 509 IRLATETVLTVLNVDQ 524


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 131 YPDRDLKPCIWSRLLFL 181
           YPD DLK  + S+LL L
Sbjct: 398 YPDEDLKVDLISKLLSL 414


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 140 GQGKTTIHTMFLVVV*NVIDKCKINRRKIKTHP 42
           GQGK    ++++ +  NVID+ +    K   HP
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHP 93


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 125  WFYPDRDLKPCIWSR 169
            W +P R ++P I++R
Sbjct: 1742 WLHPSRQIRPPIYTR 1756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,534
Number of Sequences: 5004
Number of extensions: 13999
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)