Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f09
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880...    27   1.6  
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    27   1.6  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    25   6.5  

>08_02_0739 +
           20584264-20584626,20586943-20587011,20587696-20588006,
           20588447-20588648,20588887-20588958
          Length = 338

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 107 LVVV*NVIDKCKINRRKIKTHPFCTQAQHH 18
           +V +  V+ +CK N  +I+ H  C   +HH
Sbjct: 158 VVKIVQVLYECKGNLNRIRLHGICRMTKHH 187


>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 16  LWCCACVQNGCVLIFLRF--ILHLSITFHTTTKNIV*IVVLP*PRFKTVYMVSFAIF 180
           +WCC    N     FL F  + HL   F+   ++ V +++    R     +  FA++
Sbjct: 98  IWCCHLANNSANCYFLHFTIVQHLKKKFYFHFQDYVDLIIWKVSRSSEQNLAFFAVY 154


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  FFFDLFYI-YQ*RFILRLKTLCELWFYPDRDLKP 154
           FF   FY  Y   F L L TLC   FY    LKP
Sbjct: 541 FFQTSFYFGYTLMFCLGLGTLCGKLFYTGSMLKP 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,953,930
Number of Sequences: 37544
Number of extensions: 72631
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)