Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt22f09
(239 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 31 0.082
Z81498-3|CAB04084.3| 260|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 26 4.1
EF445112-1|ABQ01579.1| 265|Caenorhabditis elegans scramblase 4 ... 26 4.1
Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 25 7.2
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass... 25 7.2
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass... 25 7.2
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 25 7.2
U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine rece... 25 9.5
AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine re... 25 9.5
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 31.5 bits (68), Expect = 0.082
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 45 MCFDFSSIYFTFINNVSYYD*KHCVNCGFTLTEI*NRVYG 164
M +DFS I+F N Y K C C +TLT + + V G
Sbjct: 131 MVYDFSQIFFLHFNCFDAYATKLCYLCYYTLTVLWSLVRG 170
>Z81498-3|CAB04084.3| 260|Caenorhabditis elegans Hypothetical
protein F11A6.2 protein.
Length = 260
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = +1
Query: 10 CCLWCCACV---QNGCVL 54
CC CCACV Q+ CV+
Sbjct: 107 CCYGCCACVGCCQHDCVV 124
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 107 KTLCELWFYPDRDLKPCIWSRLLFL 181
+T+C L+FY DL C W + FL
Sbjct: 227 ETICSLFFYIIFDLFFCFWICMSFL 251
>EF445112-1|ABQ01579.1| 265|Caenorhabditis elegans scramblase 4
protein.
Length = 265
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = +1
Query: 10 CCLWCCACV---QNGCVL 54
CC CCACV Q+ CV+
Sbjct: 107 CCYGCCACVGCCQHDCVV 124
>Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical
protein F18E2.4 protein.
Length = 335
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 114 CVNCGFTLTEI*NRVYGLVC 173
C+ CG TL + NRV+ ++C
Sbjct: 119 CMACGSTLLLVINRVFDVLC 138
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 119 ELWFYPDRDLKPCIWSRLLFLDDT 190
+ W D +PC W +LL DT
Sbjct: 117 QYWGLDASDTEPCCWMQLLHAKDT 140
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 119 ELWFYPDRDLKPCIWSRLLFLDDT 190
+ W D +PC W +LL DT
Sbjct: 117 QYWGLDASDTEPCCWMQLLHAKDT 140
>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
assigned gene nameprotein 137, isoform b protein.
Length = 1321
Score = 25.0 bits (52), Expect = 7.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1
Query: 13 CLWCCACVQNGCV 51
C+WC CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197
>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
assigned gene nameprotein 137, isoform a protein.
Length = 1372
Score = 25.0 bits (52), Expect = 7.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1
Query: 13 CLWCCACVQNGCV 51
C+WC CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 119 ELWFYPDRDLKPCIWSRLLFLDDT 190
+ W D +PC W +LL DT
Sbjct: 115 QYWGLDASDTEPCCWMQLLHAKDT 138
>U64858-8|AAB18286.3| 288|Caenorhabditis elegans Serpentine
receptor, class t protein25 protein.
Length = 288
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 16 LWCCACVQNGCVLI 57
LWCC+C N +L+
Sbjct: 77 LWCCSCFMNILLLV 90
>AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine
receptor, class t protein26 protein.
Length = 297
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 16 LWCCACVQNGCVLI 57
LWCC+C+ N +L+
Sbjct: 98 LWCCSCLLNILLLV 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,726,024
Number of Sequences: 27780
Number of extensions: 78965
Number of successful extensions: 245
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -