Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt22f07
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    33   0.008
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   1.1  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   3.5  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   3.5  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    24   4.6  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    23   8.1  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    23   8.1  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 241 NLDKTKATKIVDNTKNVTKT*NVSSENTSVNAGI*RYISSMTSRFPLGFAISAF 80
           NLD+ K     DN  + +   ++SS NTS+ +    ++S    RF L F I AF
Sbjct: 323 NLDEFKPADGADNEDSKSLVSHISSSNTSLFSNFTFFLSREVPRFSLEFVIRAF 376


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 173  HILCFCYVFCVVYNFSCLCFVQVHYHKTC 259
            H + +  +  +V N  CL F   HY   C
Sbjct: 1115 HAIAYAVLHHLVSNIGCLGFFSTHYQSLC 1143


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 146 WYLTIYFFNDI*VSFRFCHLCFYFVF 69
           W + I ++  + VSF +C + F+ +F
Sbjct: 136 WVIRILYYIYVAVSFIYCVMAFFTIF 161


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = +3

Query: 66  DKNKIKAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTFYVFVTFFVLSTILVAFVLSRFI 245
           D      + A+PK    +I+  Y ++P F +  +E+     V  + L+T+  + +   F 
Sbjct: 332 DTESYGIKSAQPKYVKSLIDAQYAELPTFPENLTEEFLNGTVGNYSLATVGGSIIPEMFP 391

Query: 246 TIKPVE 263
           T +  E
Sbjct: 392 TFRVYE 397


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = +3

Query: 63  EDKNKIKAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTF 179
           E++   K +  K K +   +E   + + +  D+F  D F
Sbjct: 126 EEEGSAKVDGKKVKADASAVEAFRKSLTSLGDIFVNDAF 164


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 214 IVDNTKNVTKT*NVSSENTSVNAGI*RYISS 122
           I+ N KNVT   N+  +NT+ ++    YI++
Sbjct: 73  IMKNKKNVTPNNNIRQKNTATSSHPSFYIAN 103


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 87  EMAKPKGNLDVIEEIYRQ--IPAF 152
           E+ K KG+LDV+  IY    IP+F
Sbjct: 242 EVRKCKGSLDVVRFIYNYGGIPSF 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,048,172
Number of Sequences: 5004
Number of extensions: 18026
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)